camlab-bioml/acdc

Bug fixed version of acdc

Automated Cell type Discovery and Classification through knowledge transfer

ACDC for CyTOF data processing

This is a Python 3 implementation of methods used in "Automated cell type discovery and classification through knowledge transfer", a automated method for analyzing CyTOF data

Setup

• Dependencies

  • This package was tested in Python 3.5
  • scikit-learn >0.18.0
  • scipy
  • third-party package Phenograph

• Installation

  • Currently, simply put the ACDC folder in the same place where the python script is executed

Tutorials

For the ease of website maintenance, tutorials are hosted here

• BMMC visualization

• BMMC classification

• AML visualization

• AML classification