Issues
- 0
Prepare for upcoming Seurat v5 release
#57 opened by Gesmira - 2
scatter plot adjustment
#56 opened by whiteorchid - 1
p-value for progeny on scRNA-seq clusters
#55 opened by frisalonza - 2
Does the proteomics data can also use this tool to get the prediction of the pathway activity?
#54 opened by polarbearsmall - 3
Which seurat assay to use for progeny
#53 opened by cf98 - 2
p53 pathway target MDM2 weighting
#52 opened by ojziff - 1
Web page deployment faulty?
#51 opened by mschubert - 0
select new pathways
#50 opened by millersan - 0
Question of the Estrogen Pathway
#47 opened by Caary - 4
Whether progeny could be used on gene-chip data
#46 opened by Caary - 1
Return Gene List from progenyScatter
#45 opened by HocheolJang426 - 1
NES for each pathway
#41 opened by HocheolJang426 - 2
- 1
Exporting scatter plot to see full list of genes associated with pathways
#34 opened by Vernonjustice - 1
- 2
Incapability of handling large matrices.
#24 opened by enblacar - 6
- 4
Possible to make corpus available?
#28 opened by messersc - 6
Input Data Requirements Not Specified by Vignette
#30 opened by DarioS - 0
- 0
- 3
- 0
- 0
Provide pre-calculated GDSC/TCGA scaling
#3 opened by mschubert - 0
Provide means of scaling by control
#4 opened by mschubert - 0
- 1
Add new pathways
#36 opened by AndreaGuarracino - 3
input data problem
#38 opened by Tommaso12 - 2
- 2
Bias in 14 pathway collection
#33 opened by asumann - 6
- 1
gene weights and directions
#29 opened by Semple-bio - 2
Error in t(expr[common_genes, , drop = FALSE]) %*% model[common_genes, : requires numeric/complex matrix/vector arguments
#26 opened by nirajkhe - 1
Modify main progeny function to also search for human and mouse models in the local environment.
#22 opened by enblacar - 5
Error in t(expr[common_genes, , drop = FALSE]) %*% model[common_genes, : requires numeric/complex matrix/vector arguments
#13 opened by yesitsjess - 1
- 4
- 1
only 11 pathways
#18 opened by michelegentili93 - 2
- 0
Warn/error if unable to match HGNC symbols
#1 opened by mschubert - 2
Missing Androgen, Estrogen and WNT?
#11 opened by yesitsjess - 2
WNT pathway
#10 opened by imkeller - 1
RNA-seq: normalization, gene lengths
#7 opened by messersc - 2
use with single gene list and scores
#9 opened by blinggi - 1
- 0