How to use ConservedFootprints model with PROGENy wrapper

Question

How to use ConservedFootprints model with PROGENy wrapper

yesitsjess opened this issue 5 years ago · 2 comments

I've found the updated model with Androgen, Estrogen and WNT pathways but how can I use it with the progeny call ("Calculate PROGENy pathway scores from gene expression")?

progeny_matrix_human_v1.csv

Answer 1 · 2020-03-19T13:18:13.000Z

Hello,

The new version of Progeny with the new pathways will be available soon.

Answer 2 · 2020-03-24T14:21:37.000Z

Hello, the new version in this repository already contains the 14 pathways. It will also be soon available in Bioconductor.