yesitsjess

Pinned Repositories

• singleseqgset

  Gene set enrichment analysis for single-cell RNAseq data

  Language:R277

• ddqc_R

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• SoupX

  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

  Language:R250614434

• harmony

  Fast, sensitive and accurate integration of single-cell data with Harmony

  Language:R5032721495

• Libra

  Language:R13345624

• Rfast

  A collection of Rfast functions for data analysis. Note 1: The vast majority of the functions accept matrices only, not data.frames. Note 2: Do not have matrices or vectors with have missing data (i.e NAs). We do no check about them and C++ internally transforms them into zeros (0), so you may get wrong results. Note 3: In general, make sure you give the correct input, in order to get the correct output. We do no checks and this is one of the many reasons we are fast.

  Language:C++13999619

• sctransform

  R package for modeling single cell UMI expression data using regularized negative binomial regression

  Language:R2021717833

• seurat

  R toolkit for single cell genomics

  Language:R2.2k757.7k892

• seurat-wrappers

  Community-provided extensions to Seurat

  Language:R28811135125

• Lamian

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yesitsjess's Repositories