satijalab/seurat-wrappers

Issues

• [monocle3] Error in converting cell_data_set to Seurat object with function "as.Seurat()"

  #207 opened a month ago by jcshuy
  0

• install seuratWrappers failed

  #137 opened 2 years ago by jinyuanchun
  12

• Cannot install seurat wrappers or seuratdata

  #205 opened a month ago by hviolaphd
  0

• Not able to convert loom to seurat

  #172 opened a year ago by millerkaplanlab
  6

• How to merge loom info into a Seurat object?

  #204 opened 2 months ago by AndreaYCT
  0

• Please maintain the support of old version Seurat

  #169 opened a year ago by Landau1994
  13

• ValueError: Expected more than 1 value per channel when training, got input size torch.Size([1, 128])

  #200 opened 3 months ago by zclecle2
  1

• Allow specification of Python virtual environment

  #199 opened 3 months ago by Debilski
  0

• RunFastMNN Error in normarg_grid(grid, x)

  #159 opened 2 years ago by zezhuo
  7

• past versions of seurat-wrappers that fits seurat v4

  #185 opened 4 months ago by Jiayi-Zheng
  4

• Velocyto- Seurat - invalid class “LogMap” object: Duplicate rownames not allowed

  #177 opened a year ago by Ruba-Mahmoud
  4

• Error: No feature overlap between existing object and new layer data

  #196 opened 5 months ago by gizembydmr
  1

• Unable to open HDF5 file.

  #197 opened 4 months ago by cmullen2-web
  0

• IntegrateLayers using FastMNN gives error: 'batch' must be specified if '...' has only one object

  #191 opened 7 months ago by yesitsjess
  2

• Warning in install.packages :package ‘SeuratWrappers’ is not available for this version of R

  #186 opened 9 months ago by lmf04
  1

• Warning: Layer counts isn't present in the assay object; returning NULL

  #194 opened 7 months ago by Noralii
  0

• The batch argument for FastMNNIntegration via IntegrateLayers is non-functional

  #193 opened 7 months ago by erzakiev
  0

• Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds

  #192 opened 7 months ago by FourAlarmFire
  0

• Error converting Seurat object to cell_data_set, bug fix no longer exists

  #189 opened 8 months ago by azurocha
  1

• no slot of name "preprocess_aux"

  #164 opened a year ago by Li-ZhiD
  3

• Alra not using Scaled data

  #188 opened 9 months ago by TomLuijts
  0

• Temporary Files

  #187 opened 9 months ago by GischD
  0

• Error using the cluster_cells function while converting an Seurat object in a cds object for monocle3

  #160 opened 2 years ago by pyjm
  4

• Installing in a Conda environment

  #183 opened 10 months ago by gkaf89
  0

• negative extents to matrix

  #182 opened 10 months ago by parkjooyoung99
  0

• Bug report(?) of adding support to v5

  #181 opened a year ago by JerryZhang-1222
  0

• Seurat-wrappers intsallation failure

  #178 opened a year ago by acaulier
  4

• Learn_graph error Error: colnames(cds)!=names(cds@clusters[[reduction_method]]$partitions)

  #176 opened a year ago by coraolpe
  0

• FastMNNIntegration not using "sketch" assay but "RNA" assay

  #174 opened a year ago by myshu2017-03-14
  0

• May I ask the author if there is a way for me to get wrappers that support seruat4?

  #171 opened a year ago by xiongsircool
  5

• Error in utils

  #170 opened a year ago by biotech70
  0

• rowData: function not defined

  #167 opened a year ago by bhayete-empress
  1

• API rate limit exceeded error?

  #163 opened a year ago by organicbrownrice
  2

• Merge multiple instances of the same seurat object where steps were performed in parallel?

  #165 opened a year ago by rdalbanus
  1

• Issue with graph_test

  #166 opened a year ago by apal6
  0

• Error: Failed to install 'SeuratWrappers' from GitHub

  #150 opened 2 years ago by ElenaSLuis
  2

• Error: Mat::init(): requested size is too large; suggest to enable ARMA_64BIT_WORD - RunVelocity()

  #161 opened a year ago by BenjaminDEMAILLE
  0

• Installing SeuratWrappers-0.2.0

  #144 opened 2 years ago by achiwa-ht
  1

• Is harmony available in seurat-wrappers?

  #145 opened 2 years ago by Cristinex
  1

• Error：undefined exports: [batchelor]{fastMNN}

  #152 opened 2 years ago by ShengFang-0829
  8

• scVI defaults

  #154 opened 2 years ago by adamgayoso
  1

• Failed to install Seurat-Wrappers

  #155 opened 2 years ago by Akanagooori
  2

• When a certain type of cells are re-clustered, how to name these cells is more standard?

  #148 opened 2 years ago by M-jk22
  0

• RunMiQC missing enforce_left_cutoff and keep_all_below_boundary #6844

  #146 opened 2 years ago by gianfilippo
  0

• save image generated by show.velocity.on.embedding.cor

  #143 opened 2 years ago by andynkili
  0

• RunPresto fails because of mean.fxn not found

  #141 opened 2 years ago by mihem
  3

• Too many small clusters found after integrating data by harmony

  #140 opened 2 years ago by SeadonXing
  0

• Error in convert seurat obj to monocle3

  #136 opened 2 years ago by zongjunxia
  4

• Error while converting Seurat Object to Monocle 3 object

  #139 opened 2 years ago by shwetajohari
  0

• Error when running RunQuantileNorm

  #138 opened 2 years ago by FionaMoon
  0