Pinned Repositories
adamgayoso.github.io
bayesian-election-forecast
bioconda-recipes
Conda recipes for the bioconda channel.
figmasvg
mplscience
Matplotlib style for scientific publications
scib
Benchmarking analysis of data integration tools
SingleCellOpenProblems
Formalizing and benchmarking open problems in single-cell genomics
DoubletDetection
Doublet detection in single-cell RNA-seq data.
scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
velovi
adamgayoso's Repositories
adamgayoso/mplscience
Matplotlib style for scientific publications
adamgayoso/bayesian-election-forecast
adamgayoso/bioconda-recipes
Conda recipes for the bioconda channel.
adamgayoso/figmasvg
adamgayoso/scib
Benchmarking analysis of data integration tools
adamgayoso/SingleCellOpenProblems
Formalizing and benchmarking open problems in single-cell genomics
adamgayoso/adamgayoso.github.io
adamgayoso/anndata
Annotated data.
adamgayoso/balanced-clustering
Reworked clustering metrics for assessing performance in imbalanced settings
adamgayoso/biom-format
The Biological Observation Matrix (BIOM) Format Project
adamgayoso/cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
adamgayoso/conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
adamgayoso/cookiecutter-scverse
Cookiecutter template for scverse
adamgayoso/jax
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
adamgayoso/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
adamgayoso/pymde
Minimum-distortion embedding with PyTorch
adamgayoso/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
adamgayoso/scanpy-tutorials
Scanpy Tutorials.
adamgayoso/scvelo
RNA Velocity generalized through dynamical modeling
adamgayoso/scverse.github.io
scverse.org website
adamgayoso/scVI
A deep generative model for gene expression profiles from single-cell RNA sequencing
adamgayoso/scvi-tools-feedstock
A conda-smithy repository for scvi-tools.
adamgayoso/scvi-tools-handbook
adamgayoso/seqc
Single-Cell Sequencing Quality Control and Processing Software
adamgayoso/single-cell-studies
Example analysis using the 'Single cell studies database'
adamgayoso/sphinx-automodapi
Sphinx extension for generating API documentation
adamgayoso/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
adamgayoso/stereoscope
Spatial mapping of cell types by integration of transcriptomics data
adamgayoso/totalVI_reproducibility
adamgayoso/umap
Uniform Manifold Approximation and Projection