Issues
- 0
`IndexError: list index out of range`
#157 opened by danli349 - 0
Input for mixed species experiments
#156 opened by rjg2186 - 1
verbose = False
#155 opened by Laolga - 0
A bug? Random seed 0 will never be set.
#154 opened by Christina-hshi - 2
- 3
Allow alternative clustering
#120 opened by adamgayoso - 2
Loading in raw matrix
#143 opened by BridgetPK - 0
Memory Error when running.
#141 opened by Mike0117 - 2
got "list index out of range" error
#132 opened by jchenpku - 4
Error for doublet detection
#129 opened by lh12565 - 3
Removing default thresholds
#112 opened by adamgayoso - 2
biorxiv submission?
#114 opened by yueqiw - 13
- 0
Reproducibility issue
#135 opened by Jayjay601 - 1
List of barcode duplets
#133 opened by ibseq - 3
Phenograph params return NA on PBMC8K
#128 opened by TomKellyGenetics - 0
- 0
Reduce memory by storing raw_counts as sparse
#117 opened by adamgayoso - 4
Verbose options
#64 opened by JonathanShor - 2
- 8
scanpy normalization
#108 opened by adamgayoso - 1
Vectorize synthetic doublet creation
#107 opened by adamgayoso - 2
NaN in doublets score
#115 opened by hwlim - 2
Run on command line
#74 opened by adamgayoso - 4
Prior doublet rate parameter
#54 opened by JonathanShor - 0
Keeping data-heavy objects after fit
#85 opened by JonathanShor - 3
setting random seed for reproducibility?
#105 opened by yueqiw - 1
tsne plot assumes raw_counts is np.ndarray
#104 opened by adamgayoso - 19
- 0
return PhenoGraph clustering in tsne plot
#109 opened by adamgayoso - 1
Improve never clustered warning message
#68 opened by JonathanShor - 4
memory requirement
#94 opened by lpantano - 1
Doublet estimation with Jurkat cell data
#93 opened by joonlee3 - 2
Input types for count matrix
#71 opened by adamgayoso - 0
Mini viz suite
#72 opened by adamgayoso - 0
Make prune=True default
#83 opened by adamgayoso - 2
Conform to sklearn estimator API
#61 opened by JonathanShor - 0
Plug-in normalization method
#73 opened by adamgayoso - 0
Add setup script
#59 opened by JonathanShor - 4
Can you give a citation to the paper you are addressing in the notebook? Thanks!
#55 opened by keremw - 2
How should the -1 "cluster" be handled?
#48 opened by JonathanShor - 5
- 1
- 2
Compare linear to downsampled doublets
#27 opened by adamgayoso - 4
Precision and Recall
#39 opened by adamgayoso - 5
- 5
- 3
- 4
- 2
Remove pandas
#17 opened by JonathanShor