lpantano

PhD in miRNA analysis in mental disease @ CRG, Barcelona, Spain. Experience in NGS data analysis. Love python, R, and data integration. twitter:@lopantano

Boston

Pinned Repositories

bcbio-nextgen
Validated, scalable, community developed variant calling and RNA-seq analysis
Language:Python1 2 01
bcbioSmallRna
R package to analyze data after small RNAseq with bcbio
Language:HTML6 3 32
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
Language:Python0 2 00
DEGreport
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
Language:R23 5 5416
isomiRs
analyze isomiRs from seqbuster tool
Language:R8 3 253
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:Python1 2 00
mypubs
creation of methods with the purpose of tools comparison
Language:Mathematica8 3 05
seqbuster
pipeline for the analysis of small RNA data
Language:Java14 4 273
seqcluster
small RNA analysis from NGS data
Language:HTML36 3 4117
seqclusterViz
visualization of seqcluster output, try at:
Language:JavaScript6 4 53

lpantano's Repositories

lpantano/seqcluster
small RNA analysis from NGS data
Language:HTML36 3 4117
lpantano/DEGreport
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
Language:R23 5 5416
lpantano/seqbuster
pipeline for the analysis of small RNA data
Language:Java14 4 273
lpantano/isomiRs
analyze isomiRs from seqbuster tool
Language:R8 3 253
lpantano/mypubs
creation of methods with the purpose of tools comparison
Language:Mathematica8 3 05
lpantano/bcbioSmallRna
R package to analyze data after small RNAseq with bcbio
Language:HTML6 3 32
lpantano/seqclusterViz
visualization of seqcluster output, try at:
Language:JavaScript6 4 53
lpantano/bcbio-nextgen
Validated, scalable, community developed variant calling and RNA-seq analysis
Language:Python1 2 01
lpantano/dummychapter1
Example of package using inst files in the vignette
Language:R1 2 31
lpantano/smrnaseq
Analysis pipeline for small-RNA sequencing data.
Language:Nextflow1 2 0
lpantano/cambridge-bio-developer-ladies
material we talk in our meet-ups
Language:HTML0 8 22
lpantano/BioC2019
BioC2019: Where Software and Biology Connect
2 0
lpantano/bioprojectR
project template for rstudio compatible with my everyday bioinformatics work
Language:R2 0
lpantano/datasciencecoursera
Repo for the data science certificate at coursera
3 0
lpantano/datasharing
The Leek group guide to data sharing
2 0
lpantano/lpantano.github.io
me lpantano.github.io
Language:HTML2 0
lpantano/mirna-evolution-analysis
some basic script to make multi-alignment and parse the changes
Language:Python2 0
lpantano/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
lpantano/multi-package-containers
Testing building mulled containers for multi-requirement tools.
2 0
lpantano/muscat
Multi-sample multi-group scRNA-seq analysis tools
Language:R2 0
lpantano/myconfig
some personal files to work in cloud
Language:Emacs Lisp2 0
lpantano/mycv
latex code for my CV
Language:TeX3 0
lpantano/myself
source code from my personal web page
Language:TeX2 0
lpantano/nf-channel-debug
Language:Nextflow2 0
lpantano/nfcore-website
Nextflow public web site
lpantano/recipes
Conda recipes for the bioconda channel.
Language:Shell2 0
lpantano/rshiny-mot
rshiny showing table with multi-omic tools
3 0
lpantano/suite2p
cell detection in calcium imaging recordings
Language:Python2 0
lpantano/test-datasets
Test data to be used for automated testing with the nf-core pipelines
2 0
lpantano/women-leaders-compbio
a list of companies in boston area to list all women leaders
3 0