Pinned Repositories
Bioinformatics-starter_kit
This repository provides a collection of frequently used functions in the field of bioinformatics, such as RNA/DNA sequence processing.
Boosting-with-Husky
CQF-deNoise
CQF-deNoise enables fast k-mer counting with memory usage nearly unaffected by sequencing errors.
gatb-core
kallisto-b
Minia
OMCas9Tools
Computational tools for OM with CRISPR Cas9 labeling.
polyester-LC
Bioconductor package "polyester", devel version. RNA-seq read simulator.
psirc
Full-length linear and circular transcript isoform reconstruction and quantification
SH-assembly
K-mer counting with low memory consumption enables de novo assembly of 106x human sequence data in 2.7 hours
Christina-hshi's Repositories
Christina-hshi/psirc
Full-length linear and circular transcript isoform reconstruction and quantification
Christina-hshi/SH-assembly
K-mer counting with low memory consumption enables de novo assembly of 106x human sequence data in 2.7 hours
Christina-hshi/CQF-deNoise
CQF-deNoise enables fast k-mer counting with memory usage nearly unaffected by sequencing errors.
Christina-hshi/Bioinformatics-starter_kit
This repository provides a collection of frequently used functions in the field of bioinformatics, such as RNA/DNA sequence processing.
Christina-hshi/Boosting-with-Husky
Christina-hshi/gatb-core
Christina-hshi/Minia
Christina-hshi/OMCas9Tools
Computational tools for OM with CRISPR Cas9 labeling.
Christina-hshi/polyester-LC
Bioconductor package "polyester", devel version. RNA-seq read simulator.
Christina-hshi/kallisto-b
Christina-hshi/Minishop-Job-Scheduler
Christina-hshi/SOAPdenovo2
Next generation sequencing reads de novo assembler.
Christina-hshi/squeakr
Squeakr: An Exact and Approximate k -mer Counting System
Christina-hshi/Linked-seq
Christina-hshi/psirc-analysis
Analysis in the Psirc project.
Christina-hshi/scanpy
Single-cell analysis in Python. Scales to >1M cells.