Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

Israel

Pinned Repositories

Cassiopeia
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
Language:Python93 12 8129
Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
Language:Python106 12 10730
epitome
Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility
Language:Python10 3 254
Hotspot
Language:Python100 3 3515
ImpulseDE2
Language:R37 7 4210
popV
Language:Python72 6 3514
scib-metrics
Accelerated, Python-only, single-cell integration benchmarking metrics
Language:Python56 7 4714
scone
Language:R53 35 10112
velovi
Language:Python39 4 157
VISION
Signature Analysis and Visualization for Single-Cell RNA-seq
Language:R171 5 9234

Yosef Lab's Repositories

YosefLab/VISION
Signature Analysis and Visualization for Single-Cell RNA-seq
Language:R171 5 9234
YosefLab/Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
Language:Python106 12 10730
YosefLab/Hotspot
Language:Python100 3 3515
YosefLab/Cassiopeia
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
Language:Python93 12 8129
YosefLab/popV
Language:Python72 6 3514
YosefLab/scib-metrics
Accelerated, Python-only, single-cell integration benchmarking metrics
Language:Python56 7 4714
YosefLab/scone
Language:R53 35 10112
YosefLab/velovi
Language:Python39 4 157
YosefLab/SymSim
Language:HTML26 6 248
YosefLab/mrvi_archive
Multi-resolution Variational Inference
Language:Python22 4 48
YosefLab/treedata
anndata with trees
Language:Python6 5 03
YosefLab/mrvi
Multi-resolution Variational Inference
Language:Python4 5 370
YosefLab/visionpy
Functional interpretation of single cell similarity maps
Language:JavaScript4 7 34
YosefLab/VIVS
Calibrated Identification of Feature Dependencies in Single-cell Multiomics
Language:Python4 4 21
YosefLab/scVI-data
datasets for scVI
3 7 11
YosefLab/Thymus_CITE-seq
Language:Jupyter Notebook3 4 2
YosefLab/yoseflab.github.io
Language:JavaScript3 19 09
YosefLab/CZI-Immuneaging
Language:Jupyter Notebook1 8 192
YosefLab/popv-reproducibility
Reproducibility for popV
Language:Jupyter Notebook1 2 03
YosefLab/scvi-tools-docker
Docker images for scvi-tools
Language:Dockerfile1 3 61
YosefLab/spatial-scvi
Deep probabilistic analysis of single-cell omics data
Language:Python1 1 0
YosefLab/pycea
scverse lineage tracing analysis toolkit
Language:Python0 4 00
YosefLab/CellRangerIDE
Language:Python
YosefLab/census-scvi
Language:Jupyter Notebook4 0
YosefLab/destvi_utils
Utilities for downstream analysis of destVI
Language:Python2 14
YosefLab/embedding-scvi
Language:Python5 02
YosefLab/mrvi-reproducibility
Nextflow pipeline for MrVI pipelines
Language:Jupyter Notebook2 20
YosefLab/resolvi-reproducibility
Reproducibility notebooks for resolVI manuscript
Language:Jupyter Notebook
YosefLab/scvi-hub-models
Reproducibility workflows for pre-trained scvi-tools models on Hugging Face
Language:Jupyter Notebook2 11
YosefLab/scvi-hub-reproducibility
Reproducibility of results/figures from scvi-hub paper
Language:Jupyter Notebook4 0