Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

Israel

Pinned Repositories

Cassiopeia
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
Language:Python82 13 7725
Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
Language:Python97 13 10528
epitome
Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility
Language:Python10 4 255
FastProject
Dimensionality reduction for single cell RNA-seq data
Language:Python35 8 1010
Hotspot
Language:Python94 4 3114
ImpulseDE2
Language:R37 9 4110
scib-metrics
Accelerated, Python-only, single-cell integration benchmarking metrics
Language:Python49 6 4411
scone
Language:R53 36 10112
velovi
Language:Python36 4 147
VISION
Signature Analysis and Visualization for Single-Cell RNA-seq
Language:R160 6 9132

Yosef Lab's Repositories

YosefLab/VISION
Signature Analysis and Visualization for Single-Cell RNA-seq
Language:R160 6 9132
YosefLab/Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
Language:Python97 13 10528
YosefLab/Hotspot
Language:Python94 4 3114
YosefLab/Cassiopeia
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
Language:Python82 13 7725
YosefLab/scone
Language:R53 36 10112
YosefLab/scib-metrics
Accelerated, Python-only, single-cell integration benchmarking metrics
Language:Python49 6 4411
YosefLab/PopV
Language:Python42 6 209
YosefLab/velovi
Language:Python36 4 147
YosefLab/SymSim
Language:HTML24 7 248
YosefLab/mrvi_archive
Multi-resolution Variational Inference
Language:Python22 4 48
YosefLab/mrvi
Multi-resolution Variational Inference
Language:Python4 5 370
YosefLab/scvi-criticism
Evaluation metrics for scvi-tools models
Language:Python4 3 12
YosefLab/VIVS
Calibrated Identification of Feature Dependencies in Single-cell Multiomics
Language:Python4 4 11
YosefLab/Thymus_CITE-seq
Language:Jupyter Notebook3 4 2
YosefLab/visionpy
Functional interpretation of single cell similarity maps
Language:JavaScript3 7 33
YosefLab/yoseflab.github.io
Language:JavaScript3 19 08
YosefLab/treedata
anndata with trees
Language:Python2 5 01
YosefLab/velovi_reproducibility
Language:Jupyter Notebook2 3 7
YosefLab/CZI-Immuneaging
Language:Jupyter Notebook1 8 192
YosefLab/scvi-hub-references
Code for the pre-trained reference models uploaded to scvi-hub on HuggingFace
Language:Python1 4 6
YosefLab/scvi-tools-docker
Docker images for scvi-tools
Language:Dockerfile1 3 61
YosefLab/spatial-scvi
Deep probabilistic analysis of single-cell omics data
Language:Python1 1 0
YosefLab/pycea
scverse lineage tracing analysis toolkit
Language:Python0 4 00
YosefLab/census-scvi
Language:Jupyter Notebook4 0
YosefLab/destvi_utils
Utilities for downstream analysis of destVI
Language:Python3 14
YosefLab/embedding-scvi
Language:Python5 02
YosefLab/mrvi-reproducibility
Nextflow pipeline for MrVI pipelines
Language:Jupyter Notebook
YosefLab/popv-reproducibility
Reproducibility for popV
Language:Jupyter Notebook2 01
YosefLab/scvi-hub-models
Reproducibility workflows for pre-trained scvi-tools models on Hugging Face
Language:Python2 11
YosefLab/scvi-hub-reproducibility
Reproducibility of results/figures from scvi-hub paper
Language:Jupyter Notebook4 0