YosefLab/SymSim

Issues

• Any code to reproduce Experiment design in the original paper?

  #27 opened a year ago by fanyue322
  0

• How to specify different cell sizes for each population

  #26 opened a year ago by javiermarchena
  2

• Varying kinetic parameters when simulating true counts

  #25 opened 3 years ago by JamesDanielOReilly
  2

• getDEgenes reports strange logfoldchanges

  #24 opened 4 years ago by fhausmann
  1

• getDEgenes returns non adjusted p-value

  #14 opened 4 years ago by beyondpie
  2

• How to control variations in the input parameter

  #3 opened 4 years ago by wangxlab
  2

• Dividebatches has repeat names on batch ?

  #10 opened 4 years ago by beyondpie
  10

• how to use PlotCoutHeatmap

  #16 opened 4 years ago by beyondpie
  8

• any specific reason to hard code min_module_size as 10 ?

  #21 opened 4 years ago by beyondpie
  4

• Obtain reference profile

  #20 opened 4 years ago by lucreziaPatruno
  4

• generating differential genes for not only cell population situation?

  #22 opened 4 years ago by beyondpie
  1

• error in estimating params from real data

  #19 opened 4 years ago by xianingz
  5

• generating gene module

  #9 opened 4 years ago by beyondpie
  9

• Failure to install on latest R (4.0.1)

  #18 opened 4 years ago by marcoxa
  5

• how can I combine SymSim with scVI?

  #17 opened 4 years ago by beyondpie
  1

• Error in SimulateTrueCounts()

  #13 opened 4 years ago by aarzalluz
  5

• build with vignettes failed

  #6 opened 4 years ago by beyondpie
  8

• Error in BestMatchParams

  #1 opened 4 years ago by lazappi
  5

• inconsistent help document

  #7 opened 4 years ago by beyondpie
  4

• final counts is not integer but float

  #12 opened 4 years ago by beyondpie
  1

• plot traces of mRNA counts for a gene in a cell over time

  #5 opened 4 years ago by olechnwin
  1

• How to make 'len2nfrag' and 'len2prob3pri' data?

  #4 opened 4 years ago by wangxlab
  19

• getDEgenes function error: Error in lapply(X = X, FUN = FUN, ...) : object 'ngenes' not found

  #8 opened 4 years ago by beyondpie
  1

• Not all files in data directory are available

  #2 opened 5 years ago by agdenadel
  3