aarzalluz
Bioinformatics PhD candidate at the Genomics of Gene Expression Lab.
Institute for Integrative Systems Biology (I2SysBio, UV-CSIC)Valencia, Spain
Pinned Repositories
figures_public
Figures for repositories I work on
scfilters
Preliminary version of a single-cell filtering tool to remove features with technical variability greater than biological. The definitive version of this package can be found in: https://github.com/gdevailly/scFeatureFilter
singlecell-isoform-simulation
This repository contains the custom code necessary to recreate the simulation in the manuscript by A. Arzalluz-Luque and A. Conesa, "Single-cell RNAseq for the study of isoforms: how is that possible?", which can be found here: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1496-z
acorde
Isoform co-usage networks from single-cell RNA-seq data
MOSim
Bulk and single-cell Multi-Omics ground truth Simulator in R
MultiPower
Statistical power studies for multi-omics experiments.
SQANTI
SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
tappAS
This repository contains the source code for the tappAS application. See README for details.
seurat
R toolkit for single cell genomics
aarzalluz's Repositories
aarzalluz/scfilters
Preliminary version of a single-cell filtering tool to remove features with technical variability greater than biological. The definitive version of this package can be found in: https://github.com/gdevailly/scFeatureFilter
aarzalluz/figures_public
Figures for repositories I work on
aarzalluz/singlecell-isoform-simulation
This repository contains the custom code necessary to recreate the simulation in the manuscript by A. Arzalluz-Luque and A. Conesa, "Single-cell RNAseq for the study of isoforms: how is that possible?", which can be found here: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1496-z