aarzalluz

figures_public

Figures for repositories I work on

scfilters

Preliminary version of a single-cell filtering tool to remove features with technical variability greater than biological. The definitive version of this package can be found in: https://github.com/gdevailly/scFeatureFilter

singlecell-isoform-simulation

This repository contains the custom code necessary to recreate the simulation in the manuscript by A. Arzalluz-Luque and A. Conesa, "Single-cell RNAseq for the study of isoforms: how is that possible?", which can be found here: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1496-z

acorde

Isoform co-usage networks from single-cell RNA-seq data

MOSim

Bulk and single-cell Multi-Omics ground truth Simulator in R

MultiPower

Statistical power studies for multi-omics experiments.

SQANTI

SQANTI3

Tool for the Quality Control of Long-Read Defined Transcriptomes

tappAS

This repository contains the source code for the tappAS application. See README for details.

seurat

R toolkit for single cell genomics

aarzalluz/scfilters

Preliminary version of a single-cell filtering tool to remove features with technical variability greater than biological. The definitive version of this package can be found in: https://github.com/gdevailly/scFeatureFilter

aarzalluz/figures_public

Figures for repositories I work on

aarzalluz/singlecell-isoform-simulation

This repository contains the custom code necessary to recreate the simulation in the manuscript by A. Arzalluz-Luque and A. Conesa, "Single-cell RNAseq for the study of isoforms: how is that possible?", which can be found here: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1496-z