Pinned Repositories
cgmaptools
toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
DOSE
:mask: Disease Ontology Semantic and Enrichment analysis
ECCO
ECCOreproduce
fanyue322.github.io
ggfun
useful functions for ggplot
IMAGE
Integrative Methylation Association with Genotypes
MethylQTL
TDEseq
fanyue322's Repositories
fanyue322/IMAGE
Integrative Methylation Association with Genotypes
fanyue322/TDEseq
fanyue322/MethylQTL
fanyue322/cgmaptools
toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
fanyue322/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
fanyue322/DOSE
:mask: Disease Ontology Semantic and Enrichment analysis
fanyue322/ECCO
fanyue322/ECCOreproduce
fanyue322/fanyue322.github.io
fanyue322/ggfun
useful functions for ggplot
fanyue322/GOSemSim
:golf: GO-terms Semantic Similarity Measures
fanyue322/HDO.db
A new version of DO.db
fanyue322/iDEA
Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
fanyue322/image.github.io
Dynamic Documents for R
fanyue322/IMAGEreproduce
fanyue322/KBD-methylation-analysis
fanyue322/LUAD
fanyue322/MR.LDP
fanyue322/OA_deconvolution
fanyue322/OAreproduce
fanyue322/OMR
fanyue322/phangorn
Phylogenetic analysis in R
fanyue322/RASCO
An R Package to Alleviate Spatial Confounding
fanyue322/regularization
fanyue322/scMultiSim
A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
fanyue322/scry
Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
fanyue322/TDEseq_workflow