YosefLab/ImpulseDE2

Issues

• ImpulseDE2 troubleshooting

  #42 opened 8 months ago by av894
  0

• computeModelFits error : invalid argument to unary operator

  #14 opened 5 years ago by gomeznick86
  4

• Error fitting Impulse model

  #29 opened 3 years ago by mallorymaynes
  4

• plotHeatmap Rownames

  #21 opened 4 years ago by AQPH222
  6

• Packages removed with Bioconductor 3.16 release

  #40 opened 2 years ago by YU-LIN96
  1

• RNA-seq data without replicate

  #15 opened 5 years ago by nachoryu
  4

• Error in if (class(matCountData) == "SummarizedExperiment") { : the condition has length > 1

  #41 opened 2 years ago by DUAN-GAO
  0

• Question about removing continuous confounders

  #39 opened 2 years ago by lovebaboon1989
  0

• Errors when running the vignette examples

  #38 opened 2 years ago by amdreamer
  1

• Questions about how to identify the expression pattern into Up/Down category

  #37 opened 2 years ago by lovebaboon1989
  0

• Using ImpulseDE2 to analyze DNA methylation data

  #36 opened 2 years ago by lovebaboon1989
  2

• ImpulseDE2 for count data, v0.99.10 # Process input Error in checkCounts(matCountData, "matCountData") : ERROR: matCountData contains non-integer elements. Requires count data. Timing stopped at: 0.052 0.005 0.057

  #35 opened 2 years ago by Barbarak17
  1

• Unable to run successfully

  #33 opened 2 years ago by michael-mazzucco
  2

• Error in if (class(matCountData) == "SummarizedExperiment") { : the condition has length > 1

  #31 opened 2 years ago by rotemavr
  6

• More than 2 conditions in dfAnnotation to compare

  #32 opened 2 years ago by lovebaboon1989
  2

• Bioconductor deprecation warning!

  #22 opened 4 years ago by janstrauss1
  1

• installation problem in R4.1.1

  #30 opened 3 years ago by wangpenhok
  6

• Normalization/Log2 transformation requirements

  #28 opened 3 years ago by mallorymaynes
  4

• Case-control heatmaps

  #16 opened 5 years ago by mikefors08
  1

• Comparison of model parameters without time

  #27 opened 3 years ago by Balays
  0

• Random effect/paired samples?

  #26 opened 3 years ago by mayanbriller
  1

• Fit lines do not follow the sample points in plotGenes

  #25 opened 3 years ago by dosshra
  1

• No points in plotGenes

  #24 opened 3 years ago by dosshra
  4

• "plotGenes" plots fits but not data in "case" mode

  #23 opened 4 years ago by mchimenti
  1

• How to obtain and supply dispersion estimates for multiple batch effects

  #20 opened 5 years ago by rjoyce-projects
  0

• DESeqDataSet,design

  #19 opened 5 years ago by ytao0210
  0

• Data Format：num

  #18 opened 5 years ago by ytao0210
  0

• How do you annotate the heatmap ?

  #17 opened 5 years ago by Fu-Luo
  0

• scaNProc / Parallelization / multi-thread

  #1 opened 7 years ago
  1

• rownames in dfAnnotation

  #13 opened 5 years ago by Janderscan
  5

• Impulse parameters don't seem to fit?

  #12 opened 5 years ago by nicolerg
  7

• How can I extract impulse model parameters?

  #11 opened 5 years ago by nicolerg
  1

• runImpulseDE2 and SVA

  #10 opened 5 years ago by gianfilippo
  2

• ImpulseDE2 with paired case/control

  #9 opened 5 years ago by jchariker
  5

• TimeCateg error

  #8 opened 5 years ago by jchariker
  5

• Error when running runImpulseDE2

  #7 opened 5 years ago by ClemensKohl
  3

• Clustering_results

  #2 opened 6 years ago by lcastro-bioinfo
  1

• Error in checkNumeric(dfAnnotation$Time, "dfAnnotation$Time") : ERROR: dfAnnotation$Time contains non-numeric elements. Requires numeric data

  #4 opened 6 years ago by senaj
  1

• Results table: although significant both is.Transient and is.Monotonous = FALSE

  #5 opened 6 years ago by PsoAE
  1

• Wrong library size normalization ImpulseDE2_plotGenes.R

  #6 opened 6 years ago by mplass
  1

• How to extract the expression profile after batch correction?

  #3 opened 7 years ago by YiweiNiu
  0