YosefLab/ImpulseDE2

installation problem in R4.1.1

Opened this issue · 6 comments

wangpenhok commented

hello, thanks for helping!
when I try to install the package , it returns a message like this:

Warning message:
In .inet_warning(msg) :
package ‘ImpulseDE2’ is not available for Bioconductor version '3.14'

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages

what is wrong and how should I handle it ?

zh-zhang1984 commented

I also have similar problem in installing the package in the new R version:

> BiocManager::install("ImpulseDE2",force = T)
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories'
for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.13 (BiocManager 1.30.16), R 4.1.1 (2021-08-10)
Installing package(s) 'ImpulseDE2'
Warning message:
In .inet_warning(msg) :
  package ‘ImpulseDE2’ is not available for Bioconductor version '3.13'

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
davidsebfischer commented

Hi both, ImpulseDE2 is currently not available on the newer bioconductor releases, you can still manually install the package: Clone the GitHub repository first into you local target directory and then install the package via "R CMD INSTALL .".

zh-zhang1984 commented

Thank you for your response; How can I type the code in console for this installation?

davidsebfischer commented

Thank you for your response; How can I type the code in console for this installation?

Does this help you https://stackoverflow.com/questions/1474081/how-do-i-install-an-r-package-from-source?

Ashley-Sturtewagen commented

I can not seem to figure out how to install the package in R. I have tried the codes you suggested: https://stackoverflow.com/questions/1474081/how-do-i-install-an-r-package-from-source

But it still does not work. Do you maybe have the code for me. Cloning the repository woudnt do it either.

rrrrui11 commented

try this： install_github("YosefLab/ImpulseDE2")

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