mchimenti
Director of Bioinformatics, Iowa Institute of Human Genetics @IIHG
University of Iowa @IIHG Iowa City, Iowa
Pinned Repositories
analysis_quelle_MPNST
atac_analysis
ATAC_seq_nextflow
A "bare bones" ATAC_seq pipeline using NGmerge/Genrich from Harvard FAS best practices
automated-alignment-fastq
A script to automate the alignment of fastq project files coming off of the HiSeq2500.
black_chimenti_just_phyloseq
bodine_marshall_mouse_RNAseq
Brenner-Po-RNASeq-Mouse-Mammary
RNAseq analysis script using TXimport, DESeq2, etc..
covid_multiomics_mar2022
data-science-coursera
Coursera Data Science Specialization
mutational-signatures
Code for preparing, collating, and analyzing mutational signatures in cancer SNPs
mchimenti's Repositories
mchimenti/black_chimenti_just_phyloseq
mchimenti/ATAC_seq_nextflow
A "bare bones" ATAC_seq pipeline using NGmerge/Genrich from Harvard FAS best practices
mchimenti/analysis_quelle_MPNST
mchimenti/atac_analysis
mchimenti/bodine_marshall_mouse_RNAseq
mchimenti/Brenner-Po-RNASeq-Mouse-Mammary
RNAseq analysis script using TXimport, DESeq2, etc..
mchimenti/covid_multiomics_mar2022
mchimenti/dunnwald_rhea_rnaseq_analysis
mchimenti/find_eligible_runs_combined
mchimenti/gramlich_eae_msc_2020
RNA_seq analysis script for the Gramlich, et al manuscript on EAE mouse models of MS
mchimenti/harata_dyt1_analysis_scripts
R studio code for analysis of Harata DYT mouse microarray data
mchimenti/klingelhutz_rnaseq_july2020_pcb126
mchimenti/klingelhutz_rnaseq_keratinocyte
mchimenti/mccray_gene_clustering_analysis
mchimenti/mchimenti.github.io
mchimenti/Newell-NanoString-FPI-analysis-Dec2021
mchimenti/project_nanostring_miRNA_breastmilk_jan2022
A NanoString DE analysis of impact of BMI on breastmilk Exosome miRNA content
mchimenti/project_rnaseq_april2022
Bo Ram Kim Project
mchimenti/project_rnaseq_mouse_21_056_Jun2021
mchimenti/project_spatial_mouseKO_Aug2021
mchimenti/proteomics
scripts that automate tasks for NGS proteomics analysis
mchimenti/rehman_welsh_analysis
mchimenti/rnaseq_tanas_sw872
RNA-seq analysis script of Tanas Lab SW872 TAZ/CAMTA and TFE/YAP cells
mchimenti/sarek
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
mchimenti/scale_biom
A program to scale BIOM files for use with PhyloSeq
mchimenti/strub_mccray_rnaseq_cfbe_cells
mchimenti/supreeda_nanostring_analysis_scripts
custom analysis for nanostring gene ex data
mchimenti/usachev_rnaseq_july2018
mchimenti/weigel_A375_C1_single_cell
mchimenti/whitmore_allen_neutrophil_rnaseq
An analysis of RNAseq data from infected PMNs using best practices tools