mchimenti
Director of Bioinformatics, Iowa Institute of Human Genetics @IIHG
University of Iowa @IIHG Iowa City, Iowa
Pinned Repositories
analysis_quelle_MPNST
atac_analysis
ATAC_seq_nextflow
A "bare bones" ATAC_seq pipeline using NGmerge/Genrich from Harvard FAS best practices
automated-alignment-fastq
A script to automate the alignment of fastq project files coming off of the HiSeq2500.
black_chimenti_just_phyloseq
bodine_marshall_mouse_RNAseq
Brenner-Po-RNASeq-Mouse-Mammary
RNAseq analysis script using TXimport, DESeq2, etc..
covid_multiomics_mar2022
data-science-coursera
Coursera Data Science Specialization
mutational-signatures
Code for preparing, collating, and analyzing mutational signatures in cancer SNPs
mchimenti's Repositories
mchimenti/mutational-signatures
Code for preparing, collating, and analyzing mutational signatures in cancer SNPs
mchimenti/automated-alignment-fastq
A script to automate the alignment of fastq project files coming off of the HiSeq2500.
mchimenti/data-science-coursera
Coursera Data Science Specialization
mchimenti/datasharing
The Leek group guide to data sharing
mchimenti/ngs-scripts
scripts!
mchimenti/oneliners
Useful bash one-liners for bioinformatics.
mchimenti/p97_sar
program to read in GLO data and munge it with pandas
mchimenti/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
mchimenti/pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
mchimenti/R_projects
Repo for R scripts written for Data Science courses and personal work
mchimenti/rsem
data analysis scripts of RSEM and DESeq results
mchimenti/SciPy2013
Slides and code for SciPy 2013 talk - "A Gentle Introduction To Machine Learning"
mchimenti/scsnv
EDA and processing of the scSNV database
mchimenti/sge_scriptwriter
a program to automate the production of SGE submission scripts (QSUB)