YosefLab/scib-metrics

Issues

• KBET (without labels) to BatchCorrection

  #150 opened 4 months ago by lebelm
  1

• bm.plot_results_table() fails when all batch correction metrics are set to False

  #157 opened 4 months ago by soerenab
  1

• Allow scArches to extend categorical covariates

  #154 opened 4 months ago by martinkim0
  0

• `Benchmarker`'s progress bar does not adjust based on `settings.progress_bar_style`

  #153 opened 4 months ago by martinkim0
  0

• Release scib-metrics 0.5.1

  #138 opened 4 months ago by martinkim0
  0

• Add workflow for running tutorials in containers

  #144 opened 4 months ago by martinkim0
  0

• the count matrices don't contain counts

  #133 opened 5 months ago by jkobject
  3

• Error when there is only one batch

  #58 opened 2 years ago by justjhong
  2

• different neighbors numbers for cells with clisi_knn

  #109 opened 6 months ago by yuyanMaggieliu
  3

• Type error when running scib_metrics

  #122 opened 8 months ago by HelloWorldLTY
  2

• Font colors in Aggregate score

  #100 opened a year ago by alitinet
  2

• kBET colors are reversed?

  #102 opened 6 months ago by andrewdchen
  1

• ARPACK error when running `metrics.benchmark`

  #96 opened 6 months ago by mairi-mcclean
  1

• Fix random seed in NMI/ARI

  #104 opened 10 months ago by Hrovatin
  1

• Incorrect return type in the documentation for ilisi/clisi

  #113 opened 9 months ago by timtreis
  1

• How to check if scib is using GPU accelerator?

  #126 opened 6 months ago by zhenxingjian
  1

• Jax Kmeans results differs from sklearn results by a lot

  #114 opened 9 months ago by Chengwei94
  3

• Jax one-hot error

  #101 opened 9 months ago by martinkim0
  1

• JAX one hot error

  #105 opened 10 months ago by robinmittas
  2

• ValueError: Each cell must have the same number of neighbors.

  #77 opened a year ago by ernohanninen
  18

• test_benchmarker.py fails if dummy data has labels size == 1

  #97 opened a year ago by elipapa
  0

• Benchmarking large-scale integration can't be accerlated

  #85 opened a year ago by yuxiaokang-source
  18

• How to compute all features' metrics

  #91 opened a year ago by GlancerZ
  3

• Improve k-means++ init efficiency

  #55 opened a year ago by martinkim0
  0

• Large memory issue for ARI/NMI with kmeans

  #50 opened a year ago by mumichae
  5

• Implement higher level api to allow benchmarking multiple embeddings of the same dataset

  #13 opened 2 years ago by adamgayoso
  1

• Plotting functions for higher-level API

  #14 opened 2 years ago by adamgayoso
  1

• Current pipeline

  #41 opened 2 years ago by adamgayoso
  0

• Implement kbet

  #10 opened 2 years ago by adamgayoso
  1

• Implement graph connectivity

  #11 opened 2 years ago by adamgayoso
  0

• Util to validate input data

  #62 opened 2 years ago by adamgayoso
  0

• Implement balanced AMI/ARI

  #51 opened 2 years ago by adamgayoso
  0

• Kmeans++ dists are being recomputed for each random seed, when it can be cached

  #47 opened 2 years ago by adamgayoso
  0

• Make pcr a util

  #39 opened 2 years ago by adamgayoso
  0

• Kmeans ++ memory

  #43 opened 2 years ago by adamgayoso
  1

• Memory issue for ASW scores

  #36 opened 2 years ago by mumichae
  4

• Implement pcr_comparison_pre_post

  #34 opened 2 years ago by adamgayoso
  0

• Implement pc regression with jax

  #8 opened 2 years ago by adamgayoso
  2

• Implement K-means++ initialization

  #21 opened 2 years ago by adamgayoso
  0

• param naming

  #32 opened 2 years ago by adamgayoso
  0

• Implement cell cycle score

  #12 opened 2 years ago by adamgayoso
  0

• Implement lisi

  #9 opened 2 years ago by adamgayoso
  0