Pinned Repositories
biocyc-extractor
Extracts chemicals and reactions from Biocyc database files.
bioe145
Course notebooks for BIOE 145, Machine Learning for Computational Biology
CanSig
Discovering de novo shared transcriptional programs in single cancer cells
cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
cellxgene-census
CZ CELLxGENE Discover Census
cs182_hw1_student
cs182_hw2_student
cs182_hw3_student
scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
scib-metrics
Accelerated, Python-only, single-cell integration benchmarking metrics
martinkim0's Repositories
martinkim0/biocyc-extractor
Extracts chemicals and reactions from Biocyc database files.
martinkim0/bioe145
Course notebooks for BIOE 145, Machine Learning for Computational Biology
martinkim0/CanSig
Discovering de novo shared transcriptional programs in single cancer cells
martinkim0/cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
martinkim0/cellxgene-census
CZ CELLxGENE Discover Census
martinkim0/cs182_hw1_student
martinkim0/cs182_hw2_student
martinkim0/cs182_hw3_student
martinkim0/fsdl-labs-2022
Complete deep learning project developed in Full Stack Deep Learning, 2022 edition. Generated automatically from https://github.com/full-stack-deep-learning/fsdl-text-recognizer-2022
martinkim0/globaldistancetest
martinkim0/jax
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
martinkim0/martinkim0
Config files for my GitHub profile.
martinkim0/distill-template
This is the repository for the distill web framework
martinkim0/ecosystem-ci
Automate issue discovery for your projects against Lightning nightly and releases.
martinkim0/fetal-brain-immune
martinkim0/mrvi
Multi-resolution Variational Inference
martinkim0/mudata
Multimodal Data (.h5mu) implementation for Python
martinkim0/openproblems-v2
Formalizing and benchmarking open problems in single-cell genomics
martinkim0/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
martinkim0/scanpy
Single-cell analysis in Python. Scales to >1M cells.
martinkim0/scgen
Single cell perturbation prediction
martinkim0/scib
Benchmarking analysis of data integration tools
martinkim0/scvelo
RNA Velocity generalized through dynamical modeling
martinkim0/scvi-tools
Deep probabilistic analysis of single-cell omics data
martinkim0/scvi-tools-feedstock
A conda-smithy repository for scvi-tools.
martinkim0/scvi-tools-site