YosefLab/epitome

Issues

• Bug in parallel_download.py

  #95 opened 2 years ago by DavidQuigley
  1

• Error loading checkpoint Epitome model

  #93 opened 2 years ago by Al-Murphy
  2

• Error loading weights for Epitome model

  #94 opened 2 years ago by Al-Murphy
  1

• Pre-trained version of Epitome available

  #92 opened 2 years ago by Al-Murphy
  1

• pip installation fails for epitome

  #91 opened 2 years ago by Al-Murphy
  3

• setup does not work with setuptools version 50.0.3

  #50 opened 3 years ago by akmorrow13
  0

• Does not build with setuptools>52.0.0

  #82 opened 3 years ago by akmorrow13
  0

• New VLP model cannot be created

  #59 opened 4 years ago by RK900
  4

• Rebase score_peak_file to not duplicate code

  #58 opened 4 years ago by akmorrow13
  0

• tensorflow INFO only prints for first iteration

  #44 opened 4 years ago by akmorrow13
  1

• remove std from all return results

  #45 opened 4 years ago by akmorrow13
  1

• Loss is not printed

  #51 opened 4 years ago by akmorrow13
  1

• cannot update pyranges to 0.0.92

  #52 opened 4 years ago by akmorrow13
  3

• Extra TF function retracing

  #43 opened 4 years ago by RK900
  6

• Scoping issue with large matrices

  #47 opened 4 years ago by RK900
  0

• Matplotlib error

  #17 opened 4 years ago by RK900
  5

• assertion for list_assays does not account for similarity edge cases

  #23 opened 4 years ago by akmorrow13
  1

• Not sufficient data for SPI1 PAX5

  #22 opened 4 years ago by akmorrow13
  2

• eval_vector should accept arrays when just dnase

  #4 opened 4 years ago by akmorrow13
  1

• Predicting on JUN + JUND when only training on JUND when assaymap is specified

  #21 opened 4 years ago by januusingh
  0

• pyranges requires cython to be installed

  #3 opened 4 years ago by akmorrow13
  1

• download_encode.py ValueError

  #7 opened 4 years ago by RK900
  3

• pip installation fails

  #5 opened 4 years ago by RK900
  1

• Downloading data fails when directory does not exist

  #11 opened 4 years ago by akmorrow13
  1

• Unit tests should run without having to download data from s3

  #8 opened 4 years ago by akmorrow13
  1