Pinned Repositories
294ppr
adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
CompBIO_Seminar_2020
Building reproducible software packages with Python, pip, and conda
endive
epitome
Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility
genomicviz
A python widget for visualization of genomic data.
Lab4cs371
final
mango
Visualization tools for genomic data. Apache 2 licensed.
pileup.js
Interactive in-browser track viewer
spark-intervalrdd
akmorrow13's Repositories
akmorrow13/epitome
Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility
akmorrow13/CompBIO_Seminar_2020
Building reproducible software packages with Python, pip, and conda
akmorrow13/pileup.js
Interactive in-browser track viewer
akmorrow13/adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
akmorrow13/mango
Visualization tools for genomic data. Apache 2 licensed.
akmorrow13/atac-seq-pipeline
ENCODE ATAC-seq pipeline
akmorrow13/avocado-1
Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputation of epigenomic experiments that have not yet been performed.
akmorrow13/bdg-convert
Conversions to and from Big Data Genomics Avro Formats. Apache 2 licensed.
akmorrow13/bdg-formats
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
akmorrow13/bioconda-recipes
Conda recipes for the bioconda channel.
akmorrow13/CbAS
Code for the ICML 2019 paper 'Conditioning by adaptive sampling for robust design'
akmorrow13/ccbskillssem.github.io
CompBio Skills Seminar
akmorrow13/cgl-docker-lib
akmorrow13/dash-bio
Open-source bioinformatics components for Dash
akmorrow13/dash-bio-docs-files
Raw files for use in the Dash Bio documentation.
akmorrow13/dash-docs
:book: The Official Dash Userguide & Documentation
akmorrow13/dash-sample-apps
Open-source demos hosted on Dash Gallery
akmorrow13/DESeq2
Differential gene expression analysis based on the negative binomial distribution
akmorrow13/ERVmap
ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.
akmorrow13/gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
akmorrow13/ginkgo-ai-client
Python client for Ginkgo's AI model API
akmorrow13/Hadoop-BAM
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
akmorrow13/jenkins-docker
akmorrow13/mcb-88-connector
A repo to hold course materials for the MCB 88 connector course.
akmorrow13/pyranges
(beta) Performant Pythonic GenomicRanges
akmorrow13/scvi-tools
Deep probabilistic analysis of single-cell omics data
akmorrow13/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
akmorrow13/UniRep
UniRep model, usage, and examples.
akmorrow13/website
akmorrow13/yoseflab.github.io