M-jk22

Pinned Repositories

• pySCENIC

  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

  Language:Python46118547186

• BayesPrism

  A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression

  Language:HTML169810646

• spacexr

  Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

  Language:HTML3291020575

• SPOTlight

  Spatial Transcriptomics Capture Location Deconvolution

  Language:R170211025

• miloR

  R package implementation of Milo for testing for differential abundance in KNN graphs

  Language:R348925323

• TwoSampleMR

  R package for performing 2-sample MR using MR-Base database

  Language:R45429429177

• STAR-Fusion

  STAR-Fusion codebase

  Language:Perl2351640881

• Cottrazm

  Construct Tumor Transition Zone Microenvironment

  Language:R392187

M-jk22's Repositories