apal6

Pinned Repositories

• pySCENIC

  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

  Language:Python44618546183

• python_for_microscopists

  https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1

  Language:Jupyter Notebook4k109752.4k

• ProjecTILs

  Interpretation of cell states using reference single-cell maps

  Language:R25399029

• alphafold

  Open source code for AlphaFold 2.

  Language:Python12.9k2288642.3k

• ImageJ

  Public domain software for processing and analyzing scientific images

  Language:Java57750184227

• CellChat

  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

  Language:R296224952

• scCustomize

  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

  Language:R220319024

• seurat

  R toolkit for single cell genomics

  Language:R2.3k748k918

• ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook2k47561501

• localcolabfold

  ColabFold on your local PC

  Language:Python61712262137

apal6's Repositories