YoshitakaMo/localcolabfold

Issues

• Question: installation of localcolabfold unsuccessful due to pandas

  #277 opened a month ago by Red847208
  0

• Using precomputed MSA and PDB files for running massive 3d structure prediction

  #274 opened 2 months ago by berkeucar
  4

• Question:will AF3 be added to this project?

  #276 opened 2 months ago by CykaZH
  0

• Question:cannot access install_colabbatch_linux.sh

  #275 opened 2 months ago by ZhaoPengpeng1116
  0

• AttributeError: module 'jax' has no attribute 'linear_uti

  #261 opened 3 months ago by ohjeyy93
  4

• Question: DNN library initialization failed

  #236 opened 2 months ago by laolanllx
  13

• 403 Forbidden message

  #273 opened 2 months ago by jjv5
  2

• CUDA12.6, gcc9.4, but "There was an error before creating cudnn handle (500): cudaErrorSymbolNotFound : named symbol not found"

  #272 opened 2 months ago by Huilin-Li
  0

• code error running colabfold_batch with custom templates

  #271 opened 2 months ago by bioinfcib
  4

• Cyclic peptide Question:

  #232 opened 3 months ago by aishiba0721
  2

• Both ColabFold notebook and localcolabfold cannot predict this sequence.

  #270 opened 2 months ago by Huilin-Li
  0

• Question: `bash install_colabbatch_linux.sh` automatically installs jax 0.4.28 which is incompatible with orbax-checkpoint 0.7.0

  #268 opened 2 months ago by Huilin-Li
  1

• Can I submit multiple folding jobs as a batch on one GPU in parallel?

  #257 opened 3 months ago by harshagrawal13
  1

• Question: Compatibility Issues With Jax and TensorFlow

  #240 opened 6 months ago by MichaelCato
  6

• READMEs are one commit out of sync

  #269 opened 2 months ago by nejmeijer
  1

• Documentation unclear on where to run the update script

  #266 opened 2 months ago by nejmeijer
  1

• Custom templates when doing a series of runs

  #265 opened 2 months ago by TieliangGan
  1

• Question: Timeout while submitting to MSA server. Retrying...

  #264 opened 2 months ago by t1nglanwang
  0

• Question:Linux update isssue.

  #263 opened 2 months ago by 3719left
  0

• How to change how the output files are named

  #262 opened 2 months ago by johnny-rodriguez
  0

• Question: LocalColabFold failed on CPU mode

  #238 opened 3 months ago by Immortals-33
  8

• [question]: command line params needed to run localcolabfold on a local server

  #260 opened 3 months ago by tamuanand
  2

• custom heterdimer multiple alignment format

  #259 opened 3 months ago by fglaser
  3

• Question:

  #230 opened 3 months ago by zhangjuan233
  1

• AlphaFold Structure Generation using pdb template

  #248 opened 3 months ago by aashuph16221
  5

• MMseq2 API error

  #254 opened 3 months ago by GISTAL
  1

• limit

  #256 opened 3 months ago by Mar-Gra-creator
  1

• [question]: What does the Warning mean when using localcolabfold

  #258 opened 3 months ago by tamuanand
  9

• Question:"Error downloading files" when trying to use deepfold model

  #237 opened 7 months ago by CykaZH
  2

• Question: Custom msa

  #255 opened 4 months ago by jimfeng9705
  3

• Checking if my IP was rate limited?

  #251 opened 4 months ago by donal1
  16

• Suddenly no gpu deteced, ratelimit, and no msa output...

  #252 opened 4 months ago by ohjeyy93
  13

• Question: Force to use template with no sequence similarity

  #250 opened 4 months ago by Bienenwolf655
  2

• Colabfold template selection

  #249 opened 4 months ago by GISTAL
  0

• Running LocalColabFold for multimer inference with precomputed monomer MSAs for each chain

  #247 opened 5 months ago by miarosenfeld
  0

• Failed runs when no GPU devices is present.

  #246 opened 5 months ago by lyskov
  0

• why my colabfold_search run takes too long time?

  #245 opened 5 months ago by spark159
  3

• Checkpointing for slurm script?

  #229 opened 5 months ago by apal6
  0

• Minimal ad-hoc sequence database

  #244 opened 5 months ago by agarrubio
  0

• Functionality to use both custom MSA and fasta with multiple sequences

  #243 opened 6 months ago by danielguion
  1

• Why does pLDDT get lower with the increase of recycle? Shouldn't the confidence level get higher with recycle

  #242 opened 6 months ago by 15019669985
  0

• Question: Warning: importing 'simtk.openmm' is deprecated

  #241 opened 6 months ago by MichaelCato
  1

• CUDA_ERROR_ILLEGAL_ADDRESS: an illegal memory access was encountered

  #239 opened 7 months ago by ilnamkang
  0

• Question: How can I obtain ~same speed as the server ?

  #233 opened 8 months ago by crisdarbellay
  3

• Question: FAILED_PRECONDITION: DNN library initialization

  #235 opened 8 months ago by tanmoyp635
  1

• Timeout while submitting to MSA server. Retrying...

  #234 opened 8 months ago by zhangjuan233
  1

• TLS/SSL connection issue on Docker desktop

  #231 opened 8 months ago by AzumaSerenThePatriot
  1

• Question: Installation issue?

  #227 opened 8 months ago by apal6
  0

• When I degraded the jax, the code can run on GPU, but Not Enough GPU memory?

  #228 opened 8 months ago by Tiramisu023
  1

• How to bypass the server when using MSA single sequence and have .cif file as template.

  #226 opened 9 months ago by johnny-rodriguez
  6