YoshitakaMo/localcolabfold

Question:

zhangjuan233 opened this issue · 1 comments

zhangjuan233 commented

Hi,

When attempting to execute the command colabfold_batch exper/fasta-res/G0_G0.fasta exper/pdbs --num-models 5, I encountered the following warnings and errors:

  • WARNING: You are welcome to use the default MSA server, however keep in mind that it's a
  • limited shared resource only capable of processing a few thousand MSAs per day. Please
  • submit jobs only from a single IP address. We reserve the right to limit access to the
  • server case-by-case when usage exceeds fair use. If you require more MSAs: You can
  • precompute all MSAs with colabfold_search or host your own API and pass it to --host-url
  • 2024-04-28 18:59:12,568 Unable to initialize backend 'rocm': NOT_FOUND: Could not find registered platform with name: "rocm". Available platform names are: CUDA
  • 2024-04-28 18:59:12,607 Unable to initialize backend 'tpu': INTERNAL: Failed to open libtpu.so: libtpu.so: cannot open shared object file: No such file or directory
  • 2024-04-28 18:59:12,627 Running on GPU
  • 2024-04-28 18:59:13,528 Found 5 citations for tools or databases
  • 2024-04-28 18:59:13,529 Query 1/1: G0_G0 (length 1334)
  • 2024-04-28 18:59:19,704 Timeout while submitting to MSA server. Retrying...
  • 2024-04-28 18:59:25,876 Timeout while submitting to MSA server. Retrying...

I look forward to your prompt response and assistance in resolving this issue.

YoshitakaMo commented

Close this issue because this is not a problem with the installation of localcolabfold.