YoshitakaMo
Bioinformatics, MD simulations, Protein chemistry, etc.
Inst. of Science Tokyo (Formerly Tokyo Medical and Dental Univ.) & The Univ. of TokyoBunkyo-ku, Tokyo, Japan
Pinned Repositories
ColabFold
Making Protein folding accessible to all via Google Colab!
g16_oniomtutorial
ONIOM tutorial files
localcolabfold
ColabFold on your local PC
MDsimulations
Tutorial for MD simulations
preparemd
prepare AMBER files for MD simulations from a pdb file
pymol-book
manuscript
pymol-psico
Pymol ScrIpt COllection (PSICO)
pymolplugin
Directory of pymol plugins
pyMSAviz
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
taopackage
TAO package
YoshitakaMo's Repositories
YoshitakaMo/localcolabfold
ColabFold on your local PC
YoshitakaMo/pymol-book
manuscript
YoshitakaMo/homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
YoshitakaMo/preparemd
prepare AMBER files for MD simulations from a pdb file
YoshitakaMo/MDsimulations
Tutorial for MD simulations
YoshitakaMo/pymolplugin
Directory of pymol plugins
YoshitakaMo/g16_oniomtutorial
ONIOM tutorial files
YoshitakaMo/pymol-psico
Pymol ScrIpt COllection (PSICO)
YoshitakaMo/pyMSAviz
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
YoshitakaMo/ColabFold
Making Protein folding accessible to all via Google Colab!
YoshitakaMo/taopackage
TAO package
YoshitakaMo/alphafold
Open source code for AlphaFold.
YoshitakaMo/alphafold3
AlphaFold 3 inference pipeline.
YoshitakaMo/bilab-tutorial
YoshitakaMo/cuemol2
CueMol: Molecular Visualization Framework
YoshitakaMo/homebrew-bio2
YoshitakaMo/homebrew-core
🍻 Default formulae for the missing package manager for macOS
YoshitakaMo/newcomer-practice
Practice repository for newcomers
YoshitakaMo/openfold
Trainable PyTorch reproduction of AlphaFold 2
YoshitakaMo/plaseek
Search for plamid replication proteins based on protein structures
YoshitakaMo/PlmDCA
Pseudo Likelihood Maximization for protein in Julia
YoshitakaMo/Uni-Fold