samuel-marsh/scCustomize

Issues

• Error Merge

  #187 opened a month ago by eblchen
  8

• conversion to anndata

  #188 opened 18 days ago by Flu09
  0

• Release Prep v2.2.0

  #167 opened 3 months ago by samuel-marsh
  3

• Enable `Add_Cell_QC_Metrics()` to Support ENSEMBL IDs for "IEG" and "MSig_DB"

  #186 opened a month ago by JuanTejedor
  2

• Plots not printing

  #185 opened a month ago by hcjarnagin
  2

• Duplicate cell name error in Cell_Highlight_Plot, even though they are not duplicate

  #177 opened 2 months ago by yojetsharma
  9

• Set different color palettes to be used for different assays in FeaturePlot_DualAssay

  #182 opened 2 months ago by raunakkar
  3

• Add_Mito_Ribo multiple species

  #184 opened 2 months ago by rhart604
  3

• MAD_stats mad_num variable doesn't change value

  #183 opened 2 months ago by chloetu-dfci
  5

• DotPlot_scCustom: Show Cluster Idents on top

  #181 opened 2 months ago by jaakoobb
  0

• Access underlying matrix used in Clustered_DotPlot to remove NA/NaN/Inf

  #178 opened 2 months ago by nehawali21
  13

• split.by error in Clustered_DotPlot function

  #172 opened 2 months ago by apal6
  5

• Adding SpatialPlots

  #160 opened 2 months ago by nina-hahn
  5

• as.anndata isseu

  #179 opened 2 months ago by lindsdudley
  3

• Adding chicken to list of supported species?

  #176 opened 2 months ago by dpearton
  2

• Merge_Seurat_List() add.cell.ids for long Seurat object list

  #175 opened 2 months ago by levinhein
  3

• Error in as.anndata object 'dim_reducs_list' not found

  #174 opened 3 months ago by moutazhelal
  1

• Use of DiscretePalette_scCustomize() with DimPlotPlus?

  #173 opened 3 months ago by charlotteharken
  16

• Allow to get unified legend when using split.by = "seurat_clusters" without having to use split_seurat = TRUE in DimPlot_scCustom()

  #171 opened 3 months ago by CroixJeremy2
  2

• Clustered_DotPlot Plotting Meta Data when split.by

  #170 opened 3 months ago by samuel-marsh
  1

• Breaking changes in rliger

  #161 opened 3 months ago by theAeon
  57

• plot_median = TRUE does not work in VlnPlot_scCustom when features contains more than one gene

  #169 opened 3 months ago by CroixJeremy2
  1

• Help with getting as.anndata running

  #168 opened 3 months ago by jjia1
  15

• as.anndata issue

  #162 opened 3 months ago by williamsdrake
  2

• group.by in DotPlot seems not working

  #158 opened 4 months ago by jasonleongbio
  6

• Percent_Expressing doesn't work with chromatin assay

  #166 opened 4 months ago by cathynewman
  4

• Wrong R script "{overwrite = TRUE.} in Add_Cell_QC_Metrics

  #165 opened 4 months ago by chaesee1
  1

• plot_density_joint_only error

  #164 opened 4 months ago by yjjeong86
  1

• Release Prep V2.1

  #154 opened 4 months ago by samuel-marsh
  2

• aspect_ratio in 'Iterate_FeaturePlot_scCustom'

  #159 opened 4 months ago by palbioinfor
  7

• Using Clustered_DotPlot function

  #149 opened 5 months ago by isaiao01
  5

• Request option to change colour of NA values when plotting

  #147 opened 5 months ago by SamuelCWJ
  3

• Clustered_Doptplot by feature groups

  #139 opened 5 months ago by marshelma
  2

• Feature Co-Expression

  #156 opened 5 months ago by pwmellors
  1

• Clustered_DotPlot using active.ident for 3 groups

  #152 opened 5 months ago by EzequielD-86
  3

• Unable to re-install scCuztomise

  #151 opened 5 months ago by MeganS92
  3

• LIGER Function Fixes

  #153 opened 5 months ago by samuel-marsh
  0

• Iterate FeaturePlot Multi

  #155 opened 6 months ago by samuel-marsh
  1

• Restrict titles only on the first row in featureplots when using split.by with more than one gene

  #146 opened 6 months ago by ishwarvh
  2

• FeaturePlot_scCustom labels are incorrect when calling metadata and gene(feature) at the same time with split.by argument

  #150 opened 6 months ago by as-keller
  3

• setting combine = FALSE in Plot_Density_Custom() returns NULL

  #145 opened 6 months ago by Brawni
  2

• Add option to control stroke size for plotting smaller dots

  #148 opened 7 months ago by nikofleischer
  2

• "alpha_exp" changing the transparency of the scalebar and not the points.

  #144 opened 7 months ago by ishwarvh
  3

• Split_FeatureScatter

  #143 opened 7 months ago by dgrutherford
  3

• Error in DelayedArray::colAutoGrid(x = counts, ncol = length(x = layer.cells))

  #137 opened 7 months ago by kenneditodd
  4

• CellBender_Feature_Diff BUG: 'x' must be an array of at least two dimensions

  #140 opened 7 months ago by JordanCTLin
  1

• Do sccustomize has an RRID entry?

  #136 opened 8 months ago by wwzhang
  3

• Error in `Add_Mito_Ribo_Seurat

  #133 opened 8 months ago by amv33576
  3

• Split.plot feature for stacked violin plots.

  #134 opened 8 months ago by Chanukya-Pavan
  1

• Featureplot color scale limits

  #135 opened 8 months ago by Prathyusha-konda
  4