samuel-marsh
Postdoctoral Fellow. Interested in Neuroimmunology, Single Cell, and Neurodegenerative Disease
Boston Childrens Hospital/HMS/Broad InstituteBoston, MA
Pinned Repositories
Alzheimers_GWAS_1Mb_genes_list
Extract gene names within +-500kb of all known Alzheimer's disease SNPs passing genome-wide significance
DGE_workshop
Hammond-et-al_2019_Microglia_scRNAseq
Repository for "pseudo"-objects based on analysis in Hammond et al., 2019 (https://doi.org/10.1016/j.immuni.2018.11.004)
Marsh_et-al_2020_scRNAseq_Dissociation_Artifacts
Code to reproduce analysis objects for the data contained in https://www.biorxiv.org/content/10.1101/2020.12.03.408542v1
Marsh_et-al_2022_scRNAseq_Dissociation_Artifacts
Code to reproduce analysis objects for the data contained in Marsh et al., 2022
samuel-marsh
Repository for personal website. Made using postcards R package.
scCustomize
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
scReticulateR
Scripts for passing single cell analyses from R objects to python packages and back.
seurat
R toolkit for single cell genomics
samuel-marsh's Repositories
samuel-marsh/scCustomize
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
samuel-marsh/Marsh_et-al_2022_scRNAseq_Dissociation_Artifacts
Code to reproduce analysis objects for the data contained in Marsh et al., 2022
samuel-marsh/Marsh_et-al_2020_scRNAseq_Dissociation_Artifacts
Code to reproduce analysis objects for the data contained in https://www.biorxiv.org/content/10.1101/2020.12.03.408542v1
samuel-marsh/DGE_workshop
samuel-marsh/Hammond-et-al_2019_Microglia_scRNAseq
Repository for "pseudo"-objects based on analysis in Hammond et al., 2019 (https://doi.org/10.1016/j.immuni.2018.11.004)
samuel-marsh/samuel-marsh
Repository for personal website. Made using postcards R package.
samuel-marsh/Alzheimers_GWAS_1Mb_genes_list
Extract gene names within +-500kb of all known Alzheimer's disease SNPs passing genome-wide significance
samuel-marsh/colorway
Functions for colors in R
samuel-marsh/scReticulateR
Scripts for passing single cell analyses from R objects to python packages and back.
samuel-marsh/ggprism
ggplot2 extension inspired by GraphPad Prism
samuel-marsh/hdWGCNA
High dimensional weighted gene co-expression network analysis
samuel-marsh/liger
R package for integrating and analyzing multiple single-cell datasets
samuel-marsh/Nebulosa
R package to visualize gene expression data based on weighted kernel density estimation
samuel-marsh/scater
Clone of the Bioconductor repository for the scater package.
samuel-marsh/scDist
Robust identification of perturbed cell types in single-cell RNA-seq data
samuel-marsh/sceasy
A package to help convert different single-cell data formats to each other
samuel-marsh/scuttle
Clone of the Bioconductor repository for the scuttle package.
samuel-marsh/seurat
R toolkit for single cell genomics
samuel-marsh/seurat-object
samuel-marsh/seurat-wrappers
Community-provided extensions to Seurat