denvercal1234GitHub
Oxford-Hoffmann DPhil, Vaccine Immunology | Erasmus LIVE MSc, Vaccinology | Duke DHVI BS | ARTIS Ventures Fellow | Gates/Dell/Greenhouse/NIH VRC UGSP Scholar |
University of Oxford
Pinned Repositories
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
CATALYST
Cytometry dATa anALYsis Tools
learntoRfromNothing
Learn to code in R from just your laptop and wifi with QNNDukeNguyen
python-database-project
A small python resource, to teach classes some key terminology for databases and to practice implementing key database features
scRepertoire
A toolkit for single-cell immune profiling
scRNA-seq
Calculating customized gene percent expression for certain organisms
seurat
R toolkit for single cell genomics
Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
velocyto.py
RNA velocity estimation in Python
denvercal1234GitHub's Repositories
denvercal1234GitHub/learntoRfromNothing
Learn to code in R from just your laptop and wifi with QNNDukeNguyen
denvercal1234GitHub/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
denvercal1234GitHub/python-database-project
A small python resource, to teach classes some key terminology for databases and to practice implementing key database features
denvercal1234GitHub/scRepertoire
A toolkit for single-cell immune profiling
denvercal1234GitHub/scRNA-seq
Calculating customized gene percent expression for certain organisms
denvercal1234GitHub/SingleCell-Multiomics
Minimal book to explore scACTseq and RNAseq
denvercal1234GitHub/Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
denvercal1234GitHub/TCRClone_NumericalSummary
To generate numerical tables summarising the clonal expansion and clonal sharing between clusters from Seurat Object with appended TCR info, e.g., output from scRepertoire
denvercal1234GitHub/2020_scWorkshop
Code and data repository for the 2020 physalia course on single cell RNA sequencing.
denvercal1234GitHub/CATALYST
Cytometry dATa anALYsis Tools
denvercal1234GitHub/seurat
R toolkit for single cell genomics
denvercal1234GitHub/Learning_Python
denvercal1234GitHub/mock
denvercal1234GitHub/OSCA.advanced
Advanced steps of the OSCA book
denvercal1234GitHub/QNNDuke
denvercal1234GitHub/scRNA-seq_online
HBC training for scRNA analysis
denvercal1234GitHub/scRNA.seq.course
Analysis of single cell RNA-seq data course
denvercal1234GitHub/scRNASeqPipeline
Various scripts for scRNAseq analysis
denvercal1234GitHub/velocyto.R
RNA velocity estimation in R