yojetsharma

Pinned Repositories

• scenicplus

  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

  Language:Jupyter Notebook1921035332

• ArchR

  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

  Language:R391151.1k140

• SnapATAC2

  Single-cell epigenomics analysis tools

  Language:Python241930028

• CellOracle

  This is the alpha version of the CellOracle package

  Language:Python324721256

• scCustomize

  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

  Language:R233319424

• seurat

  R toolkit for single cell genomics

  Language:R2.3k768.1k923

• scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.3k271k366

• celltypist

  A tool for semi-automatic cell type classification

  Language:Python319812746

• scarches

  Reference mapping for single-cell genomics

  Language:Jupyter Notebook3441217352

• single-cell-best-practices

  https://www.sc-best-practices.org

  Language:Jupyter Notebook81019194194

yojetsharma's Repositories