Issues
- 5
PBMC data no longer available
#231 opened by huananfshi - 1
- 0
AttributeError: module 'scanpy.neighbors' has no attribute 'compute_neighbors_umap'
#234 opened by bitcometz - 1
scPoli Model for Unsupervised Use
#224 opened by ShreyParikh07 - 2
Runtime error using scPoli - Tensors must have same number of dimensions: got 1 and 2
#227 opened by lsw0825 - 1
No module named 'jax.extend'
#229 opened by dustin-mullaney - 1
Issue with expimap model
#228 opened by MoLuLuMo - 1
Potential bugs for label transfer
#198 opened by shuailinli - 4
scPoli usage
#220 opened by Nusob888 - 0
- 1
Choice of reference and query data sets
#225 opened by hl-xue - 1
Errors extracting embeddings
#214 opened by itamarb-cgen - 1
the difference between scPoli and scANVI
#216 opened by YawnC - 2
More detailed training logs
#222 opened by Nusob888 - 2
environment reproducibility
#219 opened by racng - 7
fail to use the sca.models.SCVI
#206 opened by melancholy12 - 0
Update of conda environment yaml
#217 opened by wlason - 7
Runtime error using scPoli - mat1 and mat2 must have the same dtype, but got Double and Float
#215 opened by parkjosh-broadinstitute - 2
cannot setup.py install
#210 opened by jianrong0520 - 2
ImportError: libcudnn.so.8: cannot open shared object file: No such file or directory
#211 opened by jianrong0520 - 0
- 13
problems about scHPL training
#212 opened by YawnC - 4
multiVAE and organize_multiome_anndatas: module 'scarches.models' has no attribute
#199 opened by Yansr3 - 1
scArches for PeakVI
#209 opened by simozhou - 1
Multiple categorical_covariate_keys not allowed
#208 opened by Yuki-YqHuang - 2
Fail to import scarches
#202 opened by melancholy12 - 1
- 2
fail to using scpoli for dataset training
#205 opened by melancholy12 - 2
Fail to establish scpoli model
#203 opened by melancholy12 - 0
AssertionError: the erro occurs in preparing query feature naming (gene symbols) does not match the reference model feature naming (ensembl IDs )
#200 opened by Niubile001 - 0
Perform scArches in R using Seurat
#207 opened by ConDem94 - 1
Error: don't know how to restore data location of torch.storage.UntypedStorage while trying to load HLCA reference
#204 opened by bapoorva - 4
scPoli dtype error
#196 opened by JesperGrud - 1
- 2
Install issue - no .yml in repo
#194 opened by james-cranley - 4
TypeError: __init__() got an unexpected keyword argument 'condition_keys'
#193 opened by yuxiaokang-source - 10
- 22
scPoli: RuntimeError: indices should be either on cpu or on the same device as the indexed tensor (cpu)
#168 opened by dannykwells - 0
Can I ask you how to make reference dataset from multiple datasets from different tech?
#186 opened by IronSpirit - 2
Which model should I use for a cell typing task
#185 opened by abearab - 5
Documentation website failing to load
#184 opened by virpatel524 - 2
- 5
- 2
scPoli get latent representations
#170 opened by melancholy12 - 1
- 8
"Model was trained without prototypes" when using a loaded scPoli model
#176 opened by maarten-devries - 1
- 2
- 0
Include both gene IDs and gene symbols for check of feature correspondence between query and reference
#171 opened by LisaSikkema - 7
scPoli error of label transfer
#165 opened by melancholy12