Pinned Repositories
neoFusion
ARACNe-AP
Network Reverse Engineering through AP inference of Mutual Information
ASNEO
AttentionDeepMIL
Implementation of Attention-based Deep Multiple Instance Learning in PyTorch
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
ML
weizhiting.github.io
predict fusion neoantigen and assess immunogenecity
weizhiting's Repositories
weizhiting/weizhiting.github.io
predict fusion neoantigen and assess immunogenecity
weizhiting/ARACNe-AP
Network Reverse Engineering through AP inference of Mutual Information
weizhiting/ASNEO
weizhiting/AttentionDeepMIL
Implementation of Attention-based Deep Multiple Instance Learning in PyTorch
weizhiting/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
weizhiting/BIONIC-evals
Evaluation library for BIONIC
weizhiting/cmapPy
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
weizhiting/deepnlp
Deep Learning NLP Pipeline implemented on Tensorflow
weizhiting/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
weizhiting/geatpy
Evolutionary algorithm toolbox and framework with high-performance for Python
weizhiting/GSEApy
Gene Set Enrichment Analysis in Python
weizhiting/iTunes
iTunes: identification of personalized Tumor neoantigens from next-generation sequencing data
weizhiting/jupyter
weizhiting/machina
Framework for Metastatic And Clonal History INtegrative Analysis
weizhiting/MichiGAN
Learning disentangled representations of single-cell data for high-quality generation
weizhiting/MUSIC
weizhiting/neoFusion
weizhiting/nmt
TensorFlow Neural Machine Translation Tutorial
weizhiting/PerturBase
The first and most comprehensive database designed for the analysis and visualization of single cell perturbation data
weizhiting/PREP
PREP: Prioritizing of RNA Editing-based Peptides
weizhiting/pymc3
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
weizhiting/pytorch-metric-learning
The easiest way to use deep metric learning in your application. Modular, flexible, and extensible. Written in PyTorch.
weizhiting/seq2seq
Sequence to Sequence Learning with Keras
weizhiting/seq2seq-chatbot
Chatbot in 200 lines of code / Please Star -->
weizhiting/stanford-tensorflow-tutorials
This repository contains code examples for the course CS 20SI: TensorFlow for Deep Learning Research.
weizhiting/TCR
weizhiting/TensorFlow-Examples
TensorFlow Tutorial and Examples for Beginners with Latest APIs
weizhiting/tensorlayer
TensorLayer: Deep Learning and Reinforcement Learning Library for Researcher and Engineer.
weizhiting/toolbox
Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)
weizhiting/Trinity_CTAT