rna-seq-analysis
There are 266 repositories under rna-seq-analysis topic.
theislab/scarches
Reference mapping for single-cell genomics
GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
GuyTeichman/RNAlysis
RNA sequencing analysis software
bigomics/omicsplayground
Visual self-service analytics platform for big omics data.
Dragonmasterx87/Interactive-3D-Plotting-in-Seurat-3.0.0
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
MaayanLab/Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
nunofonseca/irap
integrated RNA-seq Analysis Pipeline
federicomarini/GeneTonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
nellore/rail
Scalable RNA-seq analysis
broadinstitute/single_cell_portal_core
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
federicomarini/pcaExplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
uc-bd2k/GREIN
GREIN : GEO RNA-seq Experiments Interactive Navigator
broadinstitute/single_cell_portal
Tutorials, workflows, and convenience scripts for Single Cell Portal
govinda-kamath/clustering_on_transcript_compatibility_counts
Clustering cells from single cell RNA seq assays
junchaoshi/sports1.1
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
jumphone/SPRINT
SNP-free RNA editing Identification Toolkit
jyyulab/NetBID
Data-driven Network-based Bayesian Inference of Drivers
pmartR/pmartR
The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
smangul1/rop
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
saketkc/rna-seq-snakemake
Snakemake based pipeline for RNA-Seq analysis
nf-core/lncpipe
UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
federicomarini/ideal
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
bpucker/RNA-Seq_analysis
scripts for RNA-Seq analysis
giuliospinozzi/arpir
Automatic RNA-Seq Pipelines with Interactive Report
jamesjcai/scGEAToolbox
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
RitchieLabIGH/iMOKA
interactive Multi Objective K-mer Analysis
SchulzLab/ORNA
Fast in-silico normalization algorithm for NGS data
sunyumail93/PipeRNAseq
A comprehensive pipeline for RNAseq data analysis
carpentries-incubator/bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
carpentries-incubator/workflows-nextflow
Workflow management with Nextflow and nf-core
btmonier/vidger
Make rapid visualizations of RNA-seq data in R
blengerich/Personalized_Regression
Personalized Regression
dzhang32/dasper
Detecting Aberrant Splicing Events from RNA-sequencing data
VCCRI/Ularcirc
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
eandresleon/miARma-seq
miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
nasqar/deseq2shiny
a web-based R shiny application that wraps DESeq2 R package