Hello and thank you for using the Single-Cell Portal. We hope the portal will contribute to open science by enabling visualizing and sharing scientific insight and data surrounding single-cell RNA-Seq.
Thank you for being a part of this open science effort!
To visit the portal please go to: https://portals.broadinstitute.org/single_cell
For tutorials and descriptions of files please go to: https://github.com/broadinstitute/single_cell_portal/wiki
Scripts to help when working with data files for the portal are made available in this repo and require Python 3. Using these scripts to verify the format of input files can be found at https://github.com/broadinstitute/single_cell_portal/wiki/File-Definitions.
To get set up to use these scripts:
git clone https://github.com/broadinstitute/single_cell_portal.git
cd single_cell_portal
python3 -m venv env --copies
source env/bin/activate
pip install -r requirements.txt
Then install and initialize Google Cloud SDK on your machine; many scripts here require it.
To report a bug or suggest an improvement please create a new issue at: https://github.com/broadinstitute/single_cell_portal/issues
Email us at scp-support@broadinstitute.zendesk.com
Happy Science!!!
The Single-Cell Portal Team