batch-correction
There are 24 repositories under batch-correction topic.
theislab/scarches
Reference mapping for single-cell genomics
kharchenkolab/conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
MangiolaLaboratory/sccomp
Testing differences in cell type proportions from single-cell data.
dpeerlab/Harmony
Harmony framework for connecting scRNA-seq data from discrete time points
quadbio/simspec
Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
sdomanskyi/DigitalCellSorter
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
LTLA/batchelor
Clone of the Bioconductor repository for the batchelor package.
CCBR/MAAPster
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
metamaden/methyPre
Methylation array preprocessing.
calvinmccarter/condo-adapter
Confounded Domain Adapter
pughlab/cancer-scrna-integration
A comparison of data integration methods for single-cell RNA sequencing of cancer samples
edwinv87/feats
A Python tool for performing downstream analysis on Single-Cell RNA-seq datasets
GwangWooKim/saVAE
A similarity-assisted variational autoencoder (saVAE) is a new method that adopts similarity information in the framework of the VAE.
kAI-swa/M2ASDA
Manipulate scRNA-seq data with GSASD
mandricigor/batman
Batman: Batch effect correction via minimum weight MAtchiNg
Catchxu/STANDS
Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS
ebi-gene-expression-group/selectBCM
An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))
omicsEye/massSight
An R package for the alignment and scaling of LC-MS metabolomics data
Sarah145/batch_correct
Comparison of batch correction methods for scRNA-seq data - basically a clone of BatchBench
computational-metabolomics/sbcms
:warning: :no_entry_sign: [DEPRECATED] see README for more details.
fanzhanglab/inflamedtissue_covid19_reference
Code for Zhang, et al, Genome Medicine, 2021. Cross-disease tissue data integration on single-cell transcriptomics
redpanda185/Harmony_GenePattern_Wrapper
Wrapper Script for Harmony designed to work with GenePattern Module Integrator
Finsam/NASA-GeneLab-Dataset-Aggregation
Scripts from Summer 2020 NASA GeneLab Dataset Correction project.
genepattern/Seurat.IntegrateData
GenePattern module which implements the batch correction algorithm within Seurat.