dpeerlab/Harmony

Issues

• matplotlib has trouble

  #24 opened 4 months ago by RijndertAriese
  0

• Unable to reproduce the result shown in the demo notebook

  #23 opened 7 months ago by jzw1999
  1

• Installation error

  #22 opened 10 months ago by anke-king
  1

• scikit-learn dependency

  #16 opened 4 years ago by adamgayoso
  4

• RuntimeWarning: divide by zero encountered in true_divide dists = dists ** 2/(scaling_factors.values[rows] ** 2)

  #20 opened 3 years ago by fangfang0906
  1

• Please help with the exact definition of iLISI & cLISI

  #19 opened 3 years ago by bitcometz
  0

• GPU accelerated package

  #17 opened 3 years ago by LouisFaure
  1

• Harmony data pre-processing and time connection

  #15 opened 5 years ago by pengyu1608
  2

• Ordering of the timepoints

  #14 opened 5 years ago by Marius1311
  2

• Meaning and function of the `n_components` parameter

  #13 opened 5 years ago by Marius1311
  1

• Computational efficiency of KNN graph computation

  #12 opened 5 years ago by Marius1311
  5

• Scanpy Implementation does not expose n_neighbors

  #11 opened 5 years ago by Marius1311
  3

• Don’t install things in setup.py

  #10 opened 5 years ago by flying-sheep
  7

• PyPI release

  #9 opened 5 years ago by flying-sheep
  3

• load 10X data

  #2 opened 5 years ago by jphe
  2

• Use precomputed pca

  #8 opened 5 years ago by charliex210
  3

• Pandas error in sample Harmony code

  #5 opened 5 years ago by ckbehemoth
  2

• Is Harmony deterministic?

  #7 opened 5 years ago by concatenize
  9

• int16 not suitable for fluidigm data

  #3 opened 5 years ago by AnnaLaddach
  1

• Find dynamics genes in branches

  #4 opened 6 years ago by jphe
  3

• can't import harmony

  #1 opened 6 years ago by MartinMestdagh
  2