Pandas error in sample Harmony code
ckbehemoth opened this issue · 2 comments
ckbehemoth commented
Hello all,
We're trying out the Harmony code in the sample notebook and it runs fine until it hits the line:
hvg_genes = harmony.utils.hvg_genes(norm_df)
where it throws the following error:
Traceback (most recent call last):
...
[snip]
...
File "/home/.../.local/lib/python3.6/site-packages/pandas/core/indexes/category.py", line 503, in reindex
raise ValueError("cannot reindex with a non-unique indexer")
ValueError: cannot reindex with a non-unique indexer
Has anyone seen this before? Alternately, are there specific library versions we should be running against? Here are the versions ot the underlying libs that we're using:
Library | Version |
---|---|
Harmony | 0.1 |
Palantir | 0.2.1 |
Pandas | 0.24.2 |
NumPy | 1.16.3 |
We'd really love to use the software - so any ideas or advice is welcome.
Cheers,
Bill
ManuSetty commented
Hello
Apologies for the delayed response. This issue has been fixed in the latest commit (e1f60a6). Please pull the latest version of master and let us know if the issue still persists.
ckbehemoth commented
No worries - thanks for looking into it! We'll be trying it out ASAP.
Cheers,
B