jinworks/CellChat

Issues

• Error in netVisual_circle(prob.i, sources.use = sources.use, targets.use = targets.use, : The input `color.use` should be a named vector!

  #219 opened 3 months ago by 1JYL123
  1

• Plot L-R interation between selected clusters at spatial level

  #221 opened 3 months ago by XianLZ2301
  0

• Unexpected Results in CellChat Analysis Across Two Cohorts

  #220 opened 3 months ago by macelik
  0

• install and library cellchat error

  #218 opened 3 months ago by lexie-lee
  1

• Failed to install 'CellChat' from Github

  #190 opened 4 months ago by tpdesai
  1

• issue with computecelldistance

  #217 opened 3 months ago by laetitiacollet
  0

• Liftcells is erroneously altering ligand source cell ID

  #193 opened 4 months ago by WayGW
  1

• Create cellchat object for individual sample vs merging

  #216 opened 3 months ago by RunyuXia
  0

• How can I merge two netVisual_chord_gene() pictures?

  #215 opened 3 months ago by ShuqingL
  0

• Discrete heatmap colour mapping for continuous values

  #196 opened 4 months ago by at-robins
  1

• Plot few interactions (not all) in a signalling pathway using netVisual_chord_gene

  #198 opened 4 months ago by shabs24
  4

• Errors When running netAnalysis_signalingRole_heatmap

  #214 opened 3 months ago by jamesbangbang1126
  0

• computeCellDistance' is not an exported object from 'namespace:CellChat'

  #213 opened 4 months ago by pickingastar
  0

• What does it mean when a pathway is not identified within a sample?

  #212 opened 4 months ago by RunyuXia
  0

• Cellchat 2.1.2 issue - no slot of name "data.smooth" for this object of class "CellChat"

  #202 opened 4 months ago by rgill10
  1

• The arrow of the netVisual_aggregate() function is too large...

  #211 opened 4 months ago by JosieCen
  0

• Dependencies "circlize" incorrectly specified

  #210 opened 4 months ago by Jaimelan
  0

• Questions about netVisual circle() drawing

  #209 opened 4 months ago by JosieCen
  1

• Continous variable

  #208 opened 4 months ago by RunyuXia
  0

• Human ligand-receptor interaction named according to mouse orthologous genes

  #207 opened 4 months ago by mamyAndrianteranagna
  0

• Are p-values in ranknet() adjusted for multiple correction

  #206 opened 4 months ago by DuempelmannLea
  0

• computeCommunProb trim settings

  #205 opened 4 months ago by koelschnj
  0

• projectData has been removed from NAMESPACE but is still in tutorials

  #169 opened 5 months ago by hberger
  9

• Cosmx wrong conversion factor

  #204 opened 4 months ago by roanvanscheppingen
  0

• get net, netP scores per sample

  #203 opened 4 months ago by jsim91
  0

• Starting from a Seurat object

  #201 opened 4 months ago by zznx
  0

• Is there a way to speed up cell chat.

  #167 opened 5 months ago by micosacak
  7

• Error with netAnalysis_computeCentrality

  #200 opened 4 months ago by Drunkdada
  0

• A issue about browsing "Brief tutorial for CellChat analysis of a single spatial resolved transcriptomic dataset"

  #197 opened 4 months ago by Xxian10
  1

• Install Error in utils::download.file

  #195 opened 4 months ago by ShuqingL
  0

• Distance for multiple spatial samples

  #194 opened 4 months ago by lingxin08
  0

• Removal of "projectData" function in CellChat

  #185 opened 5 months ago by AHerik
  5

• issues with custom db with Gene symbol error

  #192 opened 4 months ago by dedeepyavaka
  0

• number of items to replace is not a multiple of replacement length

  #191 opened 4 months ago by XIANZHE-LI
  0

• Reference for comparisons

  #187 opened 5 months ago by jgarces02
  3

• Why object@data.signaling matrix has zero rows?

  #189 opened 4 months ago by CoellEarth
  0

• Singaling changes in condition specific pathways

  #188 opened 5 months ago by mircomacchi
  0

• Error when run the function of "netAnalysis_computeCentrality".

  #186 opened 5 months ago by Leonrunning
  0

• netVisual_spatial bug and troubleshooting

  #184 opened 5 months ago by Jaimelan
  0

• Visium HD support

  #182 opened 5 months ago by revolvefire
  1

• netvisual_bubble filter communications

  #183 opened 5 months ago by gpomeranz
  0

• 'operator is invalid for atomic vectors' error

  #176 opened 5 months ago by soo-ni42
  1

• Problem in identifying outgoing communication patterns

  #181 opened 5 months ago by AnnuBeniwal
  0

• Cellchat object from more than one Xenium slides

  #180 opened 5 months ago by Zeba-Sultana
  0

• How to rename the sample and cluster names in CellChat object?

  #174 opened 5 months ago by micosacak
  2

• How to treat zeros and NA values from normalized Anndata object?

  #173 opened 5 months ago by estebanelias
  1

• Bug in ShinyApp Heatmap generation

  #172 opened 5 months ago by WlabRW
  0

• When identifying signaling groups based on their functional similarity,

  #171 opened 5 months ago by YISEULKIM5217
  0

• Can one extract the ligand-receptor pairs as a list?

  #168 opened 5 months ago by tkapello
  1

• Error using netAnalysis_computeCentrality with merged CellChat objects

  #170 opened 5 months ago by ana-anazco
  4