mvfki
Bioinformatician Intermediate @welch-lab , DCMB, UofM // Previously @campbio // MS in Bioinformatics, BU // BS in Life Science, ShanghaiTech University
@welch-labAnn Arbor
Pinned Repositories
leidenAlg
Implements the Leiden algorithm via an R interface
assignments
Some assignments I've done, but scripts are generalized so they are not necessarily in the required format for courses.
BullshitGenerator
Generate random text paragraphs (Chinese) for given topic (fixed phrase). Standard Python 3 Package version.
gitUpstreamTracker
A simple web crawler with a gmail sender, in order to periodically track changes in a repo
liger
R package for integrating and analyzing multiple single-cell datasets
mvfki.github.io
Yichen Wang's Personal Home Page
pyHiliter
Replacements on some Pygments lexers that matches my flavor
singleCellTK
Interactively Analyze scRNA-Seq Data
CytoSimplex
Simplex plot showing similarity between single-cells and clusters
RcppPlanc
mvfki's Repositories
mvfki/assignments
Some assignments I've done, but scripts are generalized so they are not necessarily in the required format for courses.
mvfki/gitUpstreamTracker
A simple web crawler with a gmail sender, in order to periodically track changes in a repo
mvfki/mvfki.github.io
Yichen Wang's Personal Home Page
mvfki/pyHiliter
Replacements on some Pygments lexers that matches my flavor
mvfki/BullshitGenerator
Generate random text paragraphs (Chinese) for given topic (fixed phrase). Standard Python 3 Package version.
mvfki/cstr
Unix Terminal Colored str Object
mvfki/drawCNV
Visualization of CNV distribution organized in genomic ordering, using scRNAseq data.
mvfki/liger
R package for integrating and analyzing multiple single-cell datasets
mvfki/singleCellTK
Interactively Analyze scRNA-Seq Data
mvfki/YEPT
YEast Primer Tool
mvfki/leidenAlg
Implements the Leiden algorithm via an R interface
mvfki/leidenbase
mvfki/mams
Matrix and Analysis Metadata Standards
mvfki/patina
A simulator of the fact that old Android OS make the images greener due to a bug in old Google's Skia library.
mvfki/presto
Fast Wilcoxon and auROC
mvfki/SCTK2
Manuscript for SCTK2.0
mvfki/shiny-directory-input
An shiny input widget for selecting directories
mvfki/SiNMFiD
mvfki/SoupX
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
mvfki/streamRWrapper
Wraps Python3 functions into R commands so that people can run STREAM based single-cell analysis in R and do anything else they like.
mvfki/Test
test all kinds of stuffs here
mvfki/Yesprit
Primer design tool for fission yeasts. Executable files are available here https://github.com/Sugiyama-Lab/Yesprit/releases