cell-cell-interaction

There are 20 repositories under cell-cell-interaction topic.

  • sqjin/CellChat

    R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

    Language:R62614727142

  • jinworks/CellChat

    R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

    Language:R260221539

  • saeyslab/multinichenetr

    MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

    Language:HTML11339214

  • theislab/ncem

    Learning cell communication from spatial graphs of cells

    Language:Python10263513

  • ZJUFanLab/SpaTalk

    Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

    Language:R5824118

  • earmingol/cell2cell

    User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

    Language:Python5533712

  • Mr-Milk/SpatialTis

    Spatial analysis toolkit for single cell multiplexed tissue data

    Language:Python293121

  • ZJUFanLab/CellTalkDB

    A manually curated database of literature-supported ligand-receptor interactions in human and mouse

    Language:R25245

  • multitalk/awesome-cell-cell-communication

    Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics

    Language:Jupyter Notebook24205
  • HistoJS

    Mmasoud1/HistoJS

    HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇

    Language:JavaScript17100

  • multitalk/miRTalk

    Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data

    Language:HTML6111

  • multitalk/scCrossTalk

    Infer and visualize cell-cell communication for single-cell RNA-seq data

    Language:HTML5100

  • pdmoerland/SingleCellNotes

    Links to interesting courses, tutorials, papers, software etc. related to single-cell omics data analysis

    5202

  • MihirBafna/clarify

    Multi-level Graph Autoencoder (GAE) to clarify cell cell interactions and gene regulatory network inference from spatially resolved transcriptomics

    Language:Jupyter Notebook4300

  • ZJUFanLab/scDeepTalk

    Infer cell-cell communications based on feed-forward neural network

    Language:R310

  • Ninavd/tumor-dynamics-abm

    Project on ABM tumor growth for the Agent-Based Modeling course at the UvA 2023-2024

    Language:Jupyter Notebook1100

  • antoineruzette/goo_gallery

    Goo is the Blender library for simulating biological cells, tissues and embryos in 3D.

    Language:SCSS0100

  • dalodriguez/ExPCom

    Differential communication analysis for scRNAseq datasets based on expression products

    Language:R00

  • Heinyxiao/TumorCrosstalk

    A study of the crosstalk between cancer cells and tumor microenvironmental cells.

    Language:Jupyter Notebook0100

  • zhou-ran/SRCA

    Spatially Resolved Chimeric Analysis

    Language:R10