theislab/ncem

Issues

• Cell2location workflow, normalized for abundance?

  #165 opened 2 months ago by Dillon214
  0

• How to run NCEM for own spatial data?

  #107 opened 2 years ago by ankitbioinfo
  3

• Trouble installing on python 3.10

  #159 opened a year ago by ivirshup
  6

• Interpreting Results from NCEM: Obtaining Ligand-Receptor Pairs

  #164 opened 4 months ago by hahia
  0

• 1877 del celldata.uns["spatial"] - error

  #163 opened 8 months ago by spatts14
  0

• Update required: extend_formula_ncem

  #162 opened 8 months ago by merelkuijs
  0

• Question about r2 values

  #160 opened a year ago by showvikbiswas
  0

• Almost zero documentation for the training modules API

  #152 opened a year ago by arunchakra
  3

• cannot get the grid search results

  #151 opened a year ago by cam1flag
  1

• Supporting jinja2>=3.0.3

  #132 opened a year ago by GaoGN
  1

• ncem - python 3.9

  #120 opened a year ago by AnnaChristina
  1

• LinAlgError: SVD did not converge

  #148 opened 2 years ago by Chuang1118
  2

• Work with 10X Visium Estimator

  #149 opened 2 years ago by junyho486
  0

• Naive Question

  #147 opened 2 years ago by Chuang1118
  0

• QuestionInternalError: Graph execution error:

  #144 opened 2 years ago by Lixinyoung
  1

• How to run NCEM for CODEX csv/or FCS output data?

  #131 opened 2 years ago by DRSEI
  2

• Input to the "interaction linear model"

  #142 opened 2 years ago by qsl734
  2

• Issue installing ncem on macOS

  #130 opened 2 years ago by DRSEI
  0

• compatibility with 10x visium

  #126 opened 2 years ago by wangjiawen2013
  4

• Use Tangram mapped visium for ncem

  #122 opened 2 years ago by jkbenotmane
  10

• How to implement Input CODEX data for 'NCEM

  #93 opened 2 years ago by Luosanj
  9

• Problems using GPU

  #104 opened 2 years ago by ccruizm
  2

• Where can I find the cell_metadata.csv file for MERFISH brain data in merfish_brain.ipynb?

  #119 opened 2 years ago by JINJINT
  1

• Error while loading custom data in NCEM

  #108 opened 2 years ago by archanabhardwaj
  2

• would ncem work on sequencing-based spatial transcriptomic data?

  #74 opened 2 years ago by LuyiTian
  4

• Question

  #97 opened 2 years ago by wangjiawen2013
  1

• Differential interaction

  #98 opened 2 years ago by wangjiawen2013
  2

• Error saving the output figures in png or pdf format

  #100 opened 2 years ago by archanabhardwaj
  1

• getting only zeros at enrichment step

  #99 opened 2 years ago by archanabhardwaj
  1

• structure in dataloader and base estimator

  #59 opened 3 years ago by AnnaChristina
  0

• DataLoader

  #29 opened 3 years ago by ankitbioinfo
  7

• Getting error in running python notebook of melc tonsils

  #30 opened 3 years ago by ankitbioinfo
  4

• Allow cylindrical shell as neighbourhood

  #22 opened 3 years ago by AnnaChristina
  0

• ReadTheDocs improvements

  #17 opened 3 years ago by davidsebfischer
  0

• homepage and repository duplicated in pyproject.toml

  #1 opened 3 years ago by Zethson
  0