spatts14
PhD candidate at Imperial College London interested in immunology and bioinformatics
Imperial College LondonLondon, UK
Pinned Repositories
marsilea
Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
qupath
QuPath - Open-source bioimage analysis for research
scanpy
Single-cell analysis in Python. Scales to >1M cells.
squidpy
Spatial Single Cell Analysis in Python
Biomedical_Research_DS_stream
Multiomic_integration_ssPA
DS semester one project: Multi-omic integration using pathway level analysis
py-ssPA_SP
Single sample pathway analysis tools for omics data
scvelo
RNA Velocity generalized through dynamical modeling
zellkonverter
Conversion between scRNA-seq objects
GSEApy
Gene Set Enrichment Analysis in Python
spatts14's Repositories
spatts14/Biomedical_Research_DS_stream
spatts14/Multiomic_integration_ssPA
DS semester one project: Multi-omic integration using pathway level analysis
spatts14/py-ssPA_SP
Single sample pathway analysis tools for omics data