Lixinyoung

Pinned Repositories

• STalign

  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

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• NicheDE

  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.

  Language:R14261

• Monopogen

  SNV calling from single cell sequencing

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• CamoTSS

  Detection and couting alternative TSS in single cells

  Language:Jupyter Notebook8253

• BIDCell

  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data

  Language:Python358215

• CINEMA-OT

  Language:Jupyter Notebook242115

Lixinyoung's Repositories