sqjin/CellChat

Issues

• Incorrect documentation / use of thresh.pc argument

  #752 opened a year ago by ATpoint
  2

• explanation of the df from subsetCommunication

  #750 opened a year ago by amberqiong
  4

• error in netVisual_bubble plotting

  #751 opened a year ago by Zhasha95
  4

• Using a two-species sample

  #746 opened a year ago by juanjaureguilozano
  1

• could not find function "findEnrichedSignaling"

  #748 opened a year ago by yueli8
  1

• Error in base::colSums(x, na.rm = na.rm, dims = dims, ...) : 'x' must be an array of at least two dimensions

  #747 opened a year ago by yueli8
  5

• mergeCellChat

  #749 opened a year ago by dianalee92
  0

• unused arguments (min.dist = 0.3, n.neighbors = k)

  #745 opened a year ago by yueli8
  1

• Error in if (dim(prob)[3] <= 25) { : argument is of length zero

  #735 opened a year ago by yueli8
  2

• rankingsimilarity - back to issue #160

  #744 opened a year ago by anaccsilva
  1

• Error with computeCommunProb (CellChat 2.1.0)

  #731 opened a year ago by MrModenait
  7

• cellchat@data.signaling 0 x 12257 sparse Matrix of class "dgCMatrix"

  #743 opened a year ago by changtongwa
  2

• Error in createCellChat object

  #742 opened a year ago by TZUwang
  0

• Issue with installing CellChat package in R studio

  #739 opened a year ago by Navya156
  1

• Why haven't we utilized single-cell proteomics for cell communication recognition and prediction?

  #740 opened a year ago by YuzhiSun
  1

• parameter "group.by" in subsetCellChat doesn't work

  #738 opened a year ago by ttrrtttrrt
  0

• NetP empty after running computeCommunProb

  #736 opened a year ago by Dena2021
  1

• Missing Column `annotation` in LRsig after merge cellchat and celltalk L-R pair

  #737 opened a year ago by wuy33
  0

• error with identifyOverExpressedGenes(cellchat)

  #734 opened a year ago by sanskritidey
  1

• netAnalysis_signalingRole_network cluster.cols and cluster.rows not working

  #733 opened a year ago by Gabbbbbbb
  1

• Error netVisual_heatmap() on a merged object from Seurat

  #732 opened a year ago by molybdenumt
  0

• comparing dataset error in netAnalysis_signalingChanges_scatter

  #730 opened a year ago by Leob44
  1

• scale.factors with colnames `ratio` and `tol` should be provided!

  #729 opened a year ago by QianChwnLyn
  1

• netVisual_diffInteraction for specific cell target, Error in i_set_edge_attr(x, attr(value, "name"), index = value, value = attr(value, : Length of new attribute value must be 1 or 25, the number of target edges, not 7

  #705 opened a year ago by rfreeman7
  4

• How can I performe cellchat in a Seurat v5 object?

  #728 opened a year ago by carlosccfraga
  0

• CellChat2 computeCommunProb error

  #727 opened a year ago by kcavagnero
  1

• Error in obj2 - obj1 : non-conformable arrays

  #724 opened a year ago by galaxyeee
  1

• corresponding research of example data?

  #726 opened a year ago by shenscore
  1

• Is there a minimum sample requirement for running CellChat on bulk RNA-seq data?

  #725 opened a year ago by minghao622
  0

• Question about parameter selection in scale.factors?

  #721 opened a year ago by qijt123
  1

• Error: No such strategy for futures: ‘multiprocess’

  #719 opened a year ago by madhubioinformatics
  2

• Additional details to circle plot?

  #723 opened a year ago by jcshuy
  0

• Extracellular vesicles

  #722 opened a year ago by goodwawa
  0

• subsetCellChat Error

  #720 opened a year ago by acihanckr
  1

• netVisual_diffInteraction：Error in obj2 - obj1 : non-conformable arrays

  #708 opened a year ago by JiahaoWongg
  2

• Error: Failed to install 'CellChat' from GitHub

  #715 opened a year ago by jjandshi
  1

• Inferring cell-cell interactions between cells from a scRNAseq dataset and cells from a bulk RNA seq dataset

  #718 opened a year ago by livyring
  0

• How does top (the fraction of interactions to show) work

  #714 opened a year ago by DelongZHOU
  1

• netVisual_bubble No interactions are detected

  #717 opened a year ago by DelongZHOU
  0

• Can not save multiple figures in a page in pdf device

  #716 opened a year ago by yudalang3
  0

• error in computeCommunProb (cellchat,raw.use = TRUE, type="triMean",population.size = TRUE), which said data.use[RsubunitsV, ] : subscript out of bounds

  #713 opened a year ago by wxx-dor
  0

• Interpreting netAnalysis_signalingChanges_scatter plots

  #712 opened a year ago by Zjt1640
  0

• Question about comparing the communication probabilities between two CellChat objects

  #711 opened a year ago by wyxwyx96
  0

• error in cellchat <- netClustering(cellchat, type = "functional")

  #710 opened a year ago by double322
  0

• error with:cellchat <- netEmbedding(cellchat,slot.name = 'netP', type = "functional")

  #709 opened a year ago by double322
  0

• Insert own DEG list in cellchat object for comparison analysis

  #702 opened a year ago by zeniazen5
  1

• issues with downloading cellchat tool in Rstudio

  #707 opened a year ago by ssruser
  0

• Getting adjusted p values CellChat

  #706 opened a year ago by jv-20
  5

• ERROR HELP_Error in dimnames(x) <- dn : 'dimnames'的长度[2]必需与陈列范围相等

  #704 opened a year ago by mtnhsjtu
  0

• Probabilities not adjusted when computing centrality on "netP"

  #701 opened a year ago by ycl6
  0