sqjin
Professor in the School of Mathematics and Statistics at Wuhan University <#Single Cell Genomics #Computational Biology #Systems Biology #Data Mining
Wuhan UniversityWuhan, China
Pinned Repositories
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
CellChatShiny
Standalone shiny server container for viewing CellChat object
ComplexHeatmap
Make Complex Heatmaps
easyalluvial
create alluvial plots with a single line of code
nlvelo
R pacakge for RNA velocity estimation with nonlinear models
pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
python-for-data-analysis
An introduction to data science using Python and Pandas with Jupyter notebooks
scAI
An unsupervised approach for the integrative analysis of single-cell multi-omics data
scEpath
An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
sqjin's Repositories
sqjin/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
sqjin/scAI
An unsupervised approach for the integrative analysis of single-cell multi-omics data
sqjin/scEpath
An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
sqjin/CellChatShiny
Standalone shiny server container for viewing CellChat object
sqjin/nlvelo
R pacakge for RNA velocity estimation with nonlinear models
sqjin/easyalluvial
create alluvial plots with a single line of code
sqjin/ComplexHeatmap
Make Complex Heatmaps
sqjin/pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
sqjin/scRNA-seq-motor-neuron
Codes for computational analysis of scRNA-seq data of mouse motor neurons
sqjin/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
sqjin/bigSCale2
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
sqjin/circlize
Circular visualization in R
sqjin/gdrivedl
Google Drive Download Python Script
sqjin/introduction_to_ml_with_python
Notebooks and code for the book "Introduction to Machine Learning with Python"
sqjin/metadata_agedWound_CellReports2022
sqjin/netSmooth
A lite version of netSmooth for Single Cell RNA-seq data imputation
sqjin/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
sqjin/signac
R toolkit for the analysis of single-cell chromatin data
sqjin/vioplot
Development version of vioplot R package (CRAN maintainer)
sqjin/BuenColors
R package of colors for the Buenrostro Lab
sqjin/BUS_notebooks_R
R vignettes for processing BUS format single-cell RNA-seq files
sqjin/codes_CellReports2019
codes for the pseudotime analysis in our paper published in Cell Reports 2020
sqjin/dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
sqjin/float
Single precision (float) matrices for R.
sqjin/harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
sqjin/NMF
NMF: A Flexible R package for Nonnegative Matrix Factorization (version 0.22.0)
sqjin/sceasy
A package to help convert different single-cell data formats to each other
sqjin/seurat
R toolkit for single cell genomics
sqjin/seurat-object
sqjin/Seurat-to-RNA-Velocity
A guide to using a Seurat object in conjunction with RNA Velocity