Incorrect documentation / use of thresh.pc argument

Question

Incorrect documentation / use of thresh.pc argument

ATpoint opened this issue a year ago · 2 comments

Hello,

in ?identifyOverExpressedGenes() it says that for thresh.pc Threshold of the percent of cells expressed in one cluster. However, in the code on multiple occasions such as https://github.com/jinworks/CellChat/blob/main/R/utilities.R#L374 you multiply this by 100, suggesting that either the "*100" needs to be removed everywhere or documentation must state that the argument takes the a fraction rather than percentage.

best wishes!

Answer 1 · 2024-01-24T10:21:16.000Z

sorry, wrong repo, will post in v2

Answer 2 · 2024-01-24T10:24:56.000Z

@sqjin I suggest you make this repository an archive. It's so easy to mix up this one and the new v2. Archiving it will make it clear immediately.