microenvironment

There are 9 repositories under microenvironment topic.

  • sqjin/CellChat

    R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

    Language:R72615727164

  • jinworks/CellChat

    R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

    Language:R460232278

  • LirongWu/MAPE-PPI

    Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

    Language:Python26221241

  • digitalcytometry/ecotyper

    EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

    Language:R210310042

  • AntonioDeFalco/SCEVAN

    R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

    Language:HTML112414533

  • csbg/neuroblastoma

    Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis

    Language:Jupyter Notebook11101

  • theimagelab/entrain

    Entrain: Predicting Environmental Regulators of Differentiation Trajectories

    Language:R7100

  • ceil-python/microenv

    Minimal implementation of environment with different data types represented as a tree.

    Language:Python0100

  • Jingwe-Zhao/SpotOnco

    A universal tool for rapid identification of cancer foci and tumor boundaries in spatial transcriptome

    Language:R10