Pinned Repositories
spateo-release
Spatiotemporal modeling of spatial transcriptomics
spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
topact-paper
Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"
CellDART
domain adaptation of spatial and single-cell transcriptome
Cross-Species-Model
pytorch_geometric
Graph Neural Network Library for PyTorch
pytorch_sparse
PyTorch Extension Library of Optimized Autograd Sparse Matrix Operations
seurat
R toolkit for single cell genomics
SpatialID
A cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding
Stereopy
A toolkit of spatial transcriptomic analysis.