aristoteleo/spateo-release

Issues

• cell segmentation cs.score_and_mask_pixels function modulenotfounderror

  #235 opened 2 months ago by vivian-huang
  1

• "ValueError: need at least one array to concatenate" in st.tdr.morphopath function

  #211 opened 2 months ago by pangkun97
  1

• Microenvironment modeling analysis (patsy.PatsyError: categorical data cannot be >1-dimensional)

  #234 opened 2 months ago by heziqing
  0

• Need to go through the code to ensure the documentation of the package is well done

  #210 opened 2 months ago by Xiaojieqiu
  1

• st.cs.expand_labels: TerminatedWorkerError

  #202 opened 2 months ago by sunshx-bioinfo
  2

• st.io.read_bgi_agg: Padding stain image

  #203 opened 2 months ago by sunshx-bioinfo
  2

• TypeError: concat() takes 1 positional argument but 2 were given

  #208 opened 2 months ago by WeipengMO
  3

• errors about ot.gromov.cg

  #232 opened 2 months ago by chansigit
  0

• installation issue

  #198 opened 2 months ago by wqy399
  4

• An issues when Digitization

  #212 opened 7 months ago by yang050036
  1

• question about how to plot cell segmentaion results

  #231 opened 3 months ago by caiquanyou
  0

• After installing the latest Spateo, following the tutorial cannot reproduce the results

  #230 opened 3 months ago by elegantmedstu
  0

• question abour cell segmeantation

  #229 opened 3 months ago by caiquanyou
  1

• The boundary_line is empty when I used with st.dd.identify_boundary

  #228 opened 3 months ago by yang050036
  0

• illegal hardware instruction python

  #207 opened 3 months ago by sinanugur
  4

• AttributeError: 'tuple' object has no attribute 'copy' of stage1_aligned_pc = st.tdr.construct_pc()

  #227 opened 3 months ago by weiyouzi321
  2

• AttributeError: module 'spateo.tl' has no attribute 'models_align_ref'

  #226 opened 3 months ago by weiyouzi321
  2

• AttributeError: module 'spateo.tl' has no attribute 'weighted_spatial_graph'

  #225 opened 3 months ago by xhli2
  1

• Issues in Clustering and digitization

  #195 opened 4 months ago by AkkSeannn
  10

• score_and_mask_pixels: ValueError: autodetected range of [nan, nan] is not finite

  #199 opened 5 months ago by legbar
  2

• Hi ,could I ask a question about the trajectory model?

  #218 opened 5 months ago by uush99
  3

• Are some spateo functions unusable?

  #217 opened 5 months ago by uush99
  3

• 如何在不能联网的集群使用需要预下载模型的函数进行细胞分割

  #200 opened 9 months ago by yty420
  2

• 请教Spateo绘制AP、DV轴和backbone的问题

  #214 opened 5 months ago by uush99
  5

• ImportError: cannot import name 'UniformGrid' from 'pyvista'

  #215 opened 5 months ago by Biogod2020
  1

• Non-rigid Morpho Align

  #191 opened 6 months ago by Harrison-Q-Ma
  4

• Illegal instruction (core dumped)

  #192 opened 6 months ago by YAOJ-bioin
  3

• installation issue

  #194 opened 6 months ago by JLiLab
  2

• A question about Axis & Backbone of 3D construction?

  #213 opened 6 months ago by uush99
  1

• 使用深度学习方法StarDist进行分割时出现的错误

  #193 opened 6 months ago by YAOJ-bioin
  2

• Ask for help

  #209 opened 6 months ago by uush99
  5

• AttributeError: 'Niche_Model' object has no attribute 'type_coupling'

  #185 opened 7 months ago by jefferyUstc
  2

• Question for `generate_spatial_weights_fixed_radius` when doing CCI analysis

  #184 opened 7 months ago by jefferyUstc
  2

• module 'dynamo.pp' has no attribute 'normalize_cell_expr_by_size_factors'

  #182 opened 8 months ago by xuansuyang
  11

• Image registration of ssNDA and RNA in Spateo

  #183 opened 8 months ago by Taoli0113
  1

• Make sure the L-R database are included in the package

  #180 opened 8 months ago by Xiaojieqiu
  3

• Can't run spateo on google colab

  #170 opened 8 months ago by vladimirkovacevic
  7

• http error when using st.sample_data.drosophila()

  #201 opened 9 months ago by MingLi-929
  2

• 安装问题

  #197 opened 10 months ago by lvmt
  6

• Illegal instruction: 4

  #176 opened a year ago by QianChwnLyn
  5

• libGL.so.1: cannot open shared object file: No such file or directory

  #177 opened a year ago by vladimirkovacevic
  5

• Spateo_v1_issues cell segmentation

  #166 opened a year ago by Xiaojieqiu
  2

• Spateo_v1_issues Cell-cell interactions

  #168 opened a year ago by Xiaojieqiu
  2

• We will need to add issue template

  #171 opened a year ago by Xiaojieqiu
  2

• Spateo_v1_issues digitization

  #167 opened a year ago by Xiaojieqiu
  1

• 3D reconstruction

  #178 opened a year ago by JingGuo1997
  2

• Spateo for Merfish

  #175 opened a year ago by pakiessling
  4

• Confusing number of neighbors in spateo.tools.find_neighbors

  #172 opened a year ago by Secretloong
  1

• Spateo_v1_issues 3D reconstruction

  #169 opened a year ago by Xiaojieqiu
  1

• Spateo_v1_issues data

  #165 opened a year ago by Xiaojieqiu
  3