Pinned Repositories
dynamo-notebooks
Tutorials of Dynamo usage cases and code to reproduce the manuscript
dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
dynamo-tutorials
Tutorials on using latest dynamo package
dynast-release
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
Scribe
Regulatory networks with Direct Information
Scribe-py
Regulatory networks with Direct Information in python
spateo-release
Spatiotemporal modeling of spatial transcriptomics
spateo-tutorials
tutorials for spateo package
spateo-viewer
Web application demonstrating 3D modeling of spatial transcriptomics
stereo-seq-with-dynamo
notebooks that use dynamo to analyze the Stereo-seq datasets
Aristotle's Repositories
aristoteleo/dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
aristoteleo/spateo-release
Spatiotemporal modeling of spatial transcriptomics
aristoteleo/Scribe-py
Regulatory networks with Direct Information in python
aristoteleo/dynamo-tutorials
Tutorials on using latest dynamo package
aristoteleo/dynast-release
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
aristoteleo/spateo-viewer
Web application demonstrating 3D modeling of spatial transcriptomics
aristoteleo/dynamo-notebooks
Tutorials of Dynamo usage cases and code to reproduce the manuscript
aristoteleo/spateo-tutorials
tutorials for spateo package
aristoteleo/stereo-seq-with-dynamo
notebooks that use dynamo to analyze the Stereo-seq datasets
aristoteleo/CSP4ML
repo for modeling and analyzing metabolic labeling data
aristoteleo/glmGamPoi
Fit Gamma-Poisson Generalized Linear Models Reliably
aristoteleo/logging
Repository for dynamo style's logging functionalities
aristoteleo/.github
aristoteleo/bebi103
Utilities for BE/Bi 103
aristoteleo/biocircuits
Utilities for Caltech course BE 150
aristoteleo/cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
aristoteleo/COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets
aristoteleo/DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
aristoteleo/dynamo_readthedocs
deposit tutorials for dynamo readthedocs pages
aristoteleo/dynamo_submission
notebooks for generating figures for submitting dynamo
aristoteleo/mpltex
A python package for producing publication quality images using matplotlib.
aristoteleo/PISA
A collection of tools to process single-cell omics datasets.
aristoteleo/public-apis
A collective list of free APIs for use in software and web development.
aristoteleo/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
aristoteleo/python-project-blueprint
Blueprint/Boilerplate For Python Projects
aristoteleo/qiu_lab_website
The source code for the Qiu lab website (based on ato-neulab)
aristoteleo/scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
aristoteleo/scNT-seq
aristoteleo/streamlines
Streamlines calculator
aristoteleo/vcs
Visualization Control System